Variant report

Variant	rs17106928
Chromosome Location	chr10:93443039-93443040
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93439340..93443358-chr10:93444027..93446342,3	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10509635	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10881948	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591329	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11591524	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11592233	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592289	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592379	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11592537	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11592805	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11592842	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11593642	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11594359	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11595459	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595800	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11597639	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11598220	0.80[EUR][1000 genomes]
rs11598809	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11599407	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12252794	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417730	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1418164	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1418165	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1538833	0.80[EUR][1000 genomes]
rs17106936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107004	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17107010	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17107019	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17107075	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107084	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17107090	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17107109	0.80[EUR][1000 genomes]
rs17107140	0.80[EUR][1000 genomes]
rs2000139	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2039973	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2039974	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2050914	0.80[EUR][1000 genomes]
rs2096080	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2096081	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2105296	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2421693	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28687467	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808930	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3949338	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4144399	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4531370	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56111545	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57762415	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58485305	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58521911	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59065354	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59474225	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7067554	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7067679	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7067694	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7067882	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7068311	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7068403	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7072165	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7076618	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7077513	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7080889	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7083631	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7091147	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7093641	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7094100	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096671	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7097415	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73323962	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73323974	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73323992	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73323996	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73323998	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73324002	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325905	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325906	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325913	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73325918	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74151714	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7894188	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7906154	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7917457	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7920215	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9663682	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9665431	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9665459	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93427600-93448800	Weak transcription	Liver	Liver
4	chr10:93439200-93444600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
6	chr10:93440000-93443400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:93440000-93443400	Enhancers	NHEK	skin
8	chr10:93440000-93443600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:93440000-93444400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:93440600-93443600	Enhancers	NHDF-Ad	bronchial
11	chr10:93440600-93444600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:93440600-93445000	Enhancers	HMEC	breast
13	chr10:93441200-93443400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:93441200-93445000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:93441600-93443400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
17	chr10:93441800-93443400	Weak transcription	NH-A	brain
18	chr10:93441800-93443600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:93442000-93443200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:93442000-93443200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:93442000-93443200	Weak transcription	Osteobl	bone
22	chr10:93442000-93443400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:93442000-93443400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:93442000-93443400	Weak transcription	HSMM	muscle
25	chr10:93442000-93443600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:93442000-93443600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:93442000-93443600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:93442000-93443600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:93442000-93443600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:93442000-93444400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
32	chr10:93442200-93443200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:93442200-93443200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:93442200-93443400	Weak transcription	Brain Angular Gyrus	brain
35	chr10:93442200-93443600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:93442200-93443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:93442400-93443600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:93442400-93446400	Weak transcription	Brain Anterior Caudate	brain
39	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:93442600-93443800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr10:93442800-93444400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:93442800-93445000	Enhancers	NHLF	lung
43	chr10:93443000-93445400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:93443000-93445600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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