Variant report

Variant	rs7094100
Chromosome Location	chr10:93443706-93443707
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10509635	1.00[CEU][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10881948	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114700	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591329	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11591524	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11592233	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592289	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592379	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11592407	0.88[CEU][hapmap]
rs11592537	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11592805	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11592842	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11593642	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11594359	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11595459	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595800	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11597639	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11598220	1.00[CEU][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs11598809	0.81[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11599407	1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12252794	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417730	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1418164	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1418165	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1538833	0.80[EUR][1000 genomes]
rs17106928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107004	1.00[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17107010	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17107019	0.81[ASW][hapmap];1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17107075	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107084	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17107090	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17107109	0.80[EUR][1000 genomes]
rs17107140	0.80[EUR][1000 genomes]
rs2000139	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2039973	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2039974	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2050914	0.80[EUR][1000 genomes]
rs2096080	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2096081	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2105296	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2275646	1.00[CEU][hapmap];0.88[JPT][hapmap];0.93[MEX][hapmap]
rs2421693	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2421698	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs28687467	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808930	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3949338	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4144399	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4531370	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56111545	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57762415	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58485305	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58521911	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59065354	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59474225	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7067554	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7067679	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7067694	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7067882	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7068311	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7068403	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7072165	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7072687	0.88[CEU][hapmap]
rs7076618	1.00[CEU][hapmap];0.88[JPT][hapmap];0.93[MEX][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7077513	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7080889	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7083631	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7091015	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap]
rs7091147	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7093641	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7096671	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7097415	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73323962	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73323974	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73323992	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73323996	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73323998	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73324002	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325905	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325906	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325913	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73325918	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74151714	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7894188	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7895548	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7906154	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7917457	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7920215	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9663682	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9665431	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9665459	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7094100	MARCH5	cis	multi-tissue	Pritchard

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427600-93448800	Weak transcription	Liver	Liver
3	chr10:93439200-93444600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
5	chr10:93440000-93444400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:93440600-93444600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:93440600-93445000	Enhancers	HMEC	breast
8	chr10:93441200-93445000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
10	chr10:93442000-93444400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
12	chr10:93442200-93443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:93442400-93446400	Weak transcription	Brain Anterior Caudate	brain
14	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:93442600-93443800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr10:93442800-93444400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:93442800-93445000	Enhancers	NHLF	lung
18	chr10:93443000-93445400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:93443000-93445600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:93443200-93443800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:93443200-93444200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:93443200-93444600	Enhancers	Osteobl	bone
23	chr10:93443200-93445000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:93443200-93445000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:93443400-93443800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr10:93443400-93443800	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:93443400-93443800	Enhancers	Stomach Smooth Muscle	stomach
28	chr10:93443400-93443800	Flanking Active TSS	NHEK	skin
29	chr10:93443400-93444000	Enhancers	HSMM	muscle
30	chr10:93443400-93444400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:93443400-93444600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr10:93443400-93444600	Enhancers	NH-A	brain
33	chr10:93443400-93444800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:93443400-93445000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:93443400-93445000	Enhancers	A549	lung
36	chr10:93443600-93443800	Enhancers	Brain Angular Gyrus	brain
37	chr10:93443600-93443800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr10:93443600-93443800	Enhancers	Right Atrium	heart
39	chr10:93443600-93444000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:93443600-93444000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:93443600-93444000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:93443600-93444000	Flanking Active TSS	NHDF-Ad	bronchial
43	chr10:93443600-93444400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr10:93443600-93444600	Enhancers	H1 Cell Line	embryonic stem cell
45	chr10:93443600-93444600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:93443600-93444600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr10:93443600-93444600	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr10:93443600-93444600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:93443600-93444800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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