Variant report

Variant	rs17107075
Chromosome Location	chr10:93576638-93576639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93556969..93558675-chr10:93576567..93578555,2	MCF-7	breast:
2	chr10:93561483..93563173-chr10:93576310..93578426,2	K562	blood:

Variant related genes	Relation type
ENSG00000107854	Chromatin interaction
ENSG00000228701	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10509635	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10509638	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10509639	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881948	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1114700	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11591329	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11591524	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11592233	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592289	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592379	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11592537	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11592805	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11592842	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11593642	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11593805	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11594021	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11594359	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11595459	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11595800	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11597639	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11598220	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598809	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11599407	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12252794	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1417730	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417731	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1418164	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1418165	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1538833	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17106928	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17106936	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107004	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107010	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107019	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107084	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107090	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107109	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107140	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2000139	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2039973	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2039974	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2050914	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2096080	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096081	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105296	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2185596	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275646	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421693	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2421698	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28687467	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3758501	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3949338	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41286940	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4144399	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4373831	0.85[ASN][1000 genomes]
rs4531370	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56111545	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57762415	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58485305	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58521911	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59065354	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59474225	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68185109	0.84[ASN][1000 genomes]
rs7067554	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067679	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7067694	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7067882	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7068311	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7068403	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7072165	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7076618	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077513	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7080889	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7083631	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7091147	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093641	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094100	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7096671	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7097415	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73323962	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73323974	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73323992	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73323996	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73323998	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73324002	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73325905	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73325906	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73325913	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73325918	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73327861	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73327866	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs74151714	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7894188	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895548	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906154	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7917457	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7920215	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9663682	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9665431	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9665459	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
5	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
8	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
9	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
10	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:93565800-93577800	Weak transcription	Right Ventricle	heart
12	chr10:93565800-93578200	Weak transcription	Gastric	stomach
13	chr10:93565800-93578400	Weak transcription	Brain Angular Gyrus	brain
14	chr10:93565800-93579800	Weak transcription	Small Intestine	intestine
15	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:93567600-93579800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:93569200-93626800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:93570000-93608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:93570800-93625000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:93570800-93626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:93570800-93626000	Strong transcription	Dnd41	blood
22	chr10:93571000-93580800	Weak transcription	Fetal Intestine Small	intestine
23	chr10:93571000-93623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:93571000-93624000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:93571000-93625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:93571200-93578400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:93571200-93580000	Weak transcription	Pancreas	Pancrea
28	chr10:93571200-93626400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:93571400-93592800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:93571400-93626400	Strong transcription	Liver	Liver
31	chr10:93571400-93626400	Strong transcription	Fetal Thymus	thymus
32	chr10:93571600-93581400	Weak transcription	Spleen	Spleen
33	chr10:93572000-93579200	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:93572000-93589600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:93572000-93626200	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr10:93572000-93626400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr10:93572000-93626400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:93572200-93591000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:93572200-93623600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr10:93572200-93625600	Strong transcription	Placenta	Placenta
41	chr10:93572200-93626400	Strong transcription	Primary B cells from cord blood	blood
42	chr10:93572400-93581600	Strong transcription	Hela-S3	cervix
43	chr10:93572400-93582400	Strong transcription	Primary hematopoietic stem cells	blood
44	chr10:93572400-93584200	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr10:93572400-93584400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:93572400-93595200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:93572400-93623000	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr10:93572400-93624400	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr10:93572400-93624800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr10:93572400-93626000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links