Variant report

Variant	rs73327866
Chromosome Location	chr10:93644994-93644995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93643244..93645164-chr10:93648326..93650268,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509635	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10509638	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10509639	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11592379	0.83[ASN][1000 genomes]
rs11592537	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11593805	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11594021	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11594359	0.83[ASN][1000 genomes]
rs11597639	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11598220	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598809	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11599407	0.83[ASN][1000 genomes]
rs1417730	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1417731	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1538833	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107004	0.83[ASN][1000 genomes]
rs17107010	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17107019	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17107075	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17107084	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17107090	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17107109	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107140	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2050914	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2096080	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2096081	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2185596	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275646	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421698	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758501	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808930	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs41286940	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4373831	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68185109	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7067554	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7072165	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7076618	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7091147	0.83[ASN][1000 genomes]
rs7093641	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7097415	0.83[ASN][1000 genomes]
rs73327861	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894188	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7895548	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906154	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7920215	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93642600-93645000	Enhancers	Placenta	Placenta
2	chr10:93643000-93645600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:93643000-93645800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:93643000-93645800	Enhancers	Fetal Brain Male	brain
5	chr10:93643200-93645000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:93643400-93645200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:93643400-93645600	Enhancers	Brain Substantia Nigra	brain
8	chr10:93643600-93646800	Weak transcription	Esophagus	oesophagus
9	chr10:93643800-93645000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:93643800-93645200	Enhancers	Stomach Smooth Muscle	stomach
11	chr10:93643800-93645200	Enhancers	HSMMtube	muscle
12	chr10:93643800-93645400	Enhancers	Fetal Lung	lung
13	chr10:93643800-93645800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:93643800-93645800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:93643800-93646800	Weak transcription	Aorta	Aorta
16	chr10:93643800-93646800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:93643800-93647000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:93643800-93647000	Weak transcription	Lung	lung
19	chr10:93643800-93647000	Weak transcription	Pancreas	Pancrea
20	chr10:93643800-93647000	Weak transcription	HSMM	muscle
21	chr10:93644000-93645000	Enhancers	NHEK	skin
22	chr10:93644000-93645200	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:93644000-93645400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr10:93644000-93645600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr10:93644000-93645600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr10:93644000-93645600	Enhancers	Fetal Heart	heart
27	chr10:93644000-93645800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr10:93644000-93645800	Enhancers	Fetal Brain Female	brain
29	chr10:93644000-93646800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:93644000-93646800	Weak transcription	Fetal Kidney	kidney
31	chr10:93644000-93646800	Weak transcription	Right Atrium	heart
32	chr10:93644000-93647000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr10:93644000-93647000	Weak transcription	HMEC	breast
34	chr10:93644000-93647000	Weak transcription	NHDF-Ad	bronchial
35	chr10:93644200-93645000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:93644200-93645400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:93644200-93645600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:93644200-93645800	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr10:93644200-93646800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr10:93644200-93646800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:93644200-93646800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:93644200-93646800	Weak transcription	Brain Anterior Caudate	brain
43	chr10:93644200-93646800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:93644200-93646800	Weak transcription	NH-A	brain
45	chr10:93644200-93647000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:93644200-93647000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr10:93644200-93647200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr10:93644200-93647200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:93644200-93648600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:93644400-93645000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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