Variant report

Variant	rs12266974
Chromosome Location	chr10:93719267-93719268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93712475..93715774-chr10:93718999..93722090,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10509640	0.84[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11186744	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12241256	0.83[AFR][1000 genomes]
rs12251446	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12253972	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12254369	0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12263639	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12267763	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1581240	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107211	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2048901	0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4509678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7071659	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7077506	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7901434	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7904900	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7915659	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7924014	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
3	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
4	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
6	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
7	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:93704000-93723400	Weak transcription	Colonic Mucosa	Colon
10	chr10:93704600-93719600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:93704800-93807400	Weak transcription	Gastric	stomach
12	chr10:93708000-93728800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:93708000-93732600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:93708600-93727200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:93708600-93730600	Strong transcription	Liver	Liver
16	chr10:93708600-93733200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr10:93708800-93729000	Strong transcription	Dnd41	blood
18	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:93709200-93731000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:93709400-93740000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:93710000-93750200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:93710200-93724400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:93710400-93736600	Strong transcription	Fetal Thymus	thymus
24	chr10:93710600-93728600	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr10:93710600-93729000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:93710600-93729600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:93710600-93730400	Strong transcription	Fetal Intestine Large	intestine
28	chr10:93710800-93724600	Strong transcription	NHDF-Ad	bronchial
29	chr10:93710800-93728400	Strong transcription	Primary B cells from cord blood	blood
30	chr10:93710800-93736200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:93711000-93723800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:93711000-93728400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:93711000-93728600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr10:93711000-93728600	Strong transcription	NH-A	brain
35	chr10:93711000-93729800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr10:93711000-93730200	Strong transcription	Placenta	Placenta
37	chr10:93711000-93730600	Strong transcription	HepG2	liver
38	chr10:93711000-93731000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr10:93711000-93731200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:93711000-93732400	Strong transcription	Adipose Nuclei	Adipose
41	chr10:93711000-93732600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr10:93711200-93720200	Strong transcription	Hela-S3	cervix
43	chr10:93711200-93721600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:93711200-93721800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:93711200-93722200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:93711200-93722200	Strong transcription	Fetal Lung	lung
47	chr10:93711200-93729400	Strong transcription	HSMM	muscle
48	chr10:93711200-93731200	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr10:93711400-93724800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:93711600-93723800	Strong transcription	Primary T cells from cord blood	blood

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