Variant report

Variant	rs11817194
Chromosome Location	chr10:93765001-93765002
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93764003..93765937-chr10:93769485..93771662,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10509640	1.00[JPT][hapmap]
rs10786026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882019	0.84[JPT][hapmap]
rs1104012	0.81[JPT][hapmap]
rs1107947	0.82[ASN][1000 genomes]
rs11812701	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816821	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817266	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818046	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818808	0.89[ASN][1000 genomes]
rs11818872	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819184	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254369	1.00[JPT][hapmap]
rs12256118	0.84[JPT][hapmap]
rs12263532	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17107472	0.84[JPT][hapmap]
rs1711850	0.84[JPT][hapmap]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.89[ASN][1000 genomes]
rs1935864	0.84[JPT][hapmap]
rs2048901	1.00[JPT][hapmap]
rs2138701	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2421796	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676804	0.83[EUR][1000 genomes]
rs2676824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2792019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35535933	1.00[ASN][1000 genomes]
rs4509678	1.00[JPT][hapmap]
rs45611639	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565820	0.89[ASN][1000 genomes]
rs4642987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55732480	0.89[ASN][1000 genomes]
rs61874749	0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs6583801	0.84[JPT][hapmap]
rs7070076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7071217	0.89[ASN][1000 genomes]
rs7072906	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094274	0.89[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72807247	0.89[ASN][1000 genomes]
rs72807254	0.89[ASN][1000 genomes]
rs72807268	0.89[ASN][1000 genomes]
rs72807269	0.89[ASN][1000 genomes]
rs72807274	0.89[ASN][1000 genomes]
rs72807278	0.89[ASN][1000 genomes]
rs72807282	0.89[ASN][1000 genomes]
rs72823181	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823185	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823189	0.90[ASN][1000 genomes]
rs72823191	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823200	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823201	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825305	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825306	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825315	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72825329	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs7909870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7911552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7912721	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7917198	0.90[ASN][1000 genomes]
rs7917450	0.90[ASN][1000 genomes]
rs833363	0.89[ASN][1000 genomes]
rs833364	0.84[JPT][hapmap]
rs833365	0.84[JPT][hapmap]
rs833368	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs833380	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:93714600-93768000	Weak transcription	Right Ventricle	heart
4	chr10:93718400-93774000	Weak transcription	Spleen	Spleen
5	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
6	chr10:93729800-93765600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:93736200-93784400	Weak transcription	Pancreas	Pancrea
8	chr10:93740200-93766200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:93740400-93770800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:93743000-93795000	Weak transcription	Stomach Mucosa	stomach
11	chr10:93743400-93770200	Weak transcription	Brain Angular Gyrus	brain
12	chr10:93743400-93770600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:93743600-93772800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:93743600-93772800	Weak transcription	Lung	lung
15	chr10:93743600-93786400	Weak transcription	Aorta	Aorta
16	chr10:93745000-93768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr10:93745000-93797200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:93745600-93778800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:93748600-93773400	Weak transcription	Psoas Muscle	Psoas
20	chr10:93749400-93768000	Weak transcription	HepG2	liver
21	chr10:93749400-93768800	Weak transcription	NHLF	lung
22	chr10:93749400-93770000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:93749600-93792200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:93750000-93768200	Weak transcription	Brain Substantia Nigra	brain
25	chr10:93750000-93768800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:93751400-93766200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:93751800-93770400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:93752000-93777400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:93753400-93767400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:93753600-93782400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:93754600-93783800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:93754800-93768800	Weak transcription	Brain Anterior Caudate	brain
33	chr10:93754800-93770000	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:93754800-93773800	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:93754800-93782000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:93755800-93784200	Weak transcription	Esophagus	oesophagus
37	chr10:93756000-93772800	Weak transcription	HMEC	breast
38	chr10:93756400-93765600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:93756400-93770000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr10:93757200-93765800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:93757600-93768600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:93757600-93776200	Weak transcription	Fetal Kidney	kidney
43	chr10:93757800-93765800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr10:93757800-93767800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr10:93757800-93774000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:93757800-93785000	Weak transcription	Small Intestine	intestine
47	chr10:93758400-93767600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:93758400-93767800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:93758400-93768800	Weak transcription	HSMMtube	muscle
50	chr10:93758400-93769400	Weak transcription	Fetal Brain Male	brain

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