Variant report

Variant	rs1107947
Chromosome Location	chr10:93668110-93668111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93667092..93669492-chr10:93682952..93684892,2	MCF-7	breast:
2	chr10:93666065..93670682-chr10:93680624..93684315,6	K562	blood:
3	chr10:93555222..93557965-chr10:93666465..93668632,2	MCF-7	breast:
4	chr10:93668102..93670664-chr10:93683184..93685213,2	K562	blood:
5	chr10:93667884..93668537-chr19:10613648..10614526,2	NB4	blood:
6	chr10:93666676..93671284-chr10:93682037..93685018,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079999	Chromatin interaction
ENSG00000228701	Chromatin interaction
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11812701	0.82[ASN][1000 genomes]
rs11816821	0.82[ASN][1000 genomes]
rs11817194	0.82[ASN][1000 genomes]
rs11817266	0.82[ASN][1000 genomes]
rs11818046	0.82[ASN][1000 genomes]
rs11818872	0.82[ASN][1000 genomes]
rs11819184	0.82[ASN][1000 genomes]
rs17349172	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138701	0.82[ASN][1000 genomes]
rs2421796	0.82[ASN][1000 genomes]
rs35535933	0.82[ASN][1000 genomes]
rs45611639	0.82[ASN][1000 genomes]
rs61874749	0.91[ASN][1000 genomes]
rs61874751	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	0.82[ASN][1000 genomes]
rs7093658	0.82[ASN][1000 genomes]
rs7095552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823181	0.82[ASN][1000 genomes]
rs72823185	0.82[ASN][1000 genomes]
rs72823191	0.82[ASN][1000 genomes]
rs72823200	0.82[ASN][1000 genomes]
rs72823201	0.82[ASN][1000 genomes]
rs72825305	0.82[ASN][1000 genomes]
rs72825306	0.82[ASN][1000 genomes]
rs72825329	0.82[ASN][1000 genomes]
rs7897761	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917198	0.91[ASN][1000 genomes]
rs7917450	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv18192	chr10:93668098-93668730	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv551921	chr10:93668110-93668663	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93666200-93669600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:93666400-93668200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:93666400-93669400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:93666600-93668800	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr10:93666800-93668200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:93666800-93669400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr10:93667000-93668200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:93667000-93668200	Flanking Active TSS	Dnd41	blood
9	chr10:93667000-93669000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:93667000-93669200	Active TSS	Rectal Smooth Muscle	rectum
11	chr10:93667000-93669400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:93667000-93669600	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr10:93667000-93669600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:93667200-93668200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:93667200-93669200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:93667200-93669400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:93667200-93669400	Active TSS	Colon Smooth Muscle	Colon
18	chr10:93667200-93669600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:93667200-93669600	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr10:93667200-93669600	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr10:93667200-93669600	Active TSS	NHDF-Ad	bronchial
22	chr10:93667200-93669800	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr10:93667400-93668200	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr10:93667400-93668200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr10:93667400-93668200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr10:93667400-93668200	Flanking Active TSS	HUVEC	blood vessel
27	chr10:93667400-93668200	Flanking Active TSS	NHEK	skin
28	chr10:93667400-93668400	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr10:93667400-93668800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:93667400-93668800	Active TSS	Osteobl	bone
31	chr10:93667400-93669200	Active TSS	NHLF	lung
32	chr10:93667400-93669400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:93667400-93669400	Active TSS	Fetal Intestine Small	intestine
34	chr10:93667400-93669400	Active TSS	Fetal Muscle Trunk	muscle
35	chr10:93667400-93669600	Active TSS	H1 Cell Line	embryonic stem cell
36	chr10:93667400-93669600	Active TSS	Brain Cingulate Gyrus	brain
37	chr10:93667400-93670000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:93667600-93668200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:93667600-93668200	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr10:93667600-93668200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr10:93667600-93668200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:93667600-93668200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr10:93667600-93668200	Flanking Active TSS	HMEC	breast
44	chr10:93667600-93668200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:93667600-93668800	Active TSS	Placenta Amnion	Placenta Amnion
46	chr10:93667600-93668800	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr10:93667600-93668800	Active TSS	GM12878-XiMat	blood
48	chr10:93667600-93669000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:93667600-93669000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:93667600-93669000	Active TSS	Fetal Muscle Leg	muscle

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