Variant report

Variant	rs17349172
Chromosome Location	chr10:93665816-93665817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:93665590-93666064	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr10:93665774-93665829	K562	blood:	n/a	n/a
3	POLR2A	chr10:93665680-93666341	K562	blood:	n/a	n/a
4	POLR2A	chr10:93665733-93666129	PFSK-1	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93664705..93666331-chr10:93667291..93668797,2	MCF-7	breast:
2	chr10:93664900..93666596-chr10:93666902..93668970,2	MCF-7	breast:
3	chr10:93664591..93666451-chr10:93667211..93669714,2	K562	blood:
4	chr10:93662025..93663745-chr10:93663754..93666963,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272817	TF binding region
ENSG00000272817	Chromatin interaction
ENSG00000174721	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1107947	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812701	0.82[ASN][1000 genomes]
rs11816821	0.82[ASN][1000 genomes]
rs11817194	0.82[ASN][1000 genomes]
rs11817266	0.82[ASN][1000 genomes]
rs11818046	0.82[ASN][1000 genomes]
rs11818872	0.82[ASN][1000 genomes]
rs11819184	0.82[ASN][1000 genomes]
rs2138701	0.82[ASN][1000 genomes]
rs2421796	0.82[ASN][1000 genomes]
rs35535933	0.82[ASN][1000 genomes]
rs45611639	0.82[ASN][1000 genomes]
rs61874749	0.91[ASN][1000 genomes]
rs61874751	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	0.82[ASN][1000 genomes]
rs7093658	0.82[ASN][1000 genomes]
rs7095552	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823181	0.82[ASN][1000 genomes]
rs72823185	0.82[ASN][1000 genomes]
rs72823191	0.82[ASN][1000 genomes]
rs72823200	0.82[ASN][1000 genomes]
rs72823201	0.82[ASN][1000 genomes]
rs72825305	0.82[ASN][1000 genomes]
rs72825306	0.82[ASN][1000 genomes]
rs72825329	0.82[ASN][1000 genomes]
rs7897761	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917198	0.91[ASN][1000 genomes]
rs7917450	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
2	chr10:93658200-93666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:93661000-93667000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93661000-93667000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:93662000-93667000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93662200-93667000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:93662200-93667200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr10:93662200-93667400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:93662200-93667400	Weak transcription	HSMMtube	muscle
10	chr10:93662200-93667600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:93662400-93666400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:93662400-93666800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:93662400-93667000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:93662400-93667000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:93662400-93667000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:93662400-93667200	Weak transcription	K562	blood
17	chr10:93662400-93667600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:93662600-93666400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:93662600-93666400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:93662600-93667000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:93662600-93667000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr10:93662600-93667000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:93662600-93667000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:93662600-93667000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:93662600-93667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:93662600-93667000	Weak transcription	Fetal Thymus	thymus
27	chr10:93662600-93667000	Weak transcription	NH-A	brain
28	chr10:93662600-93667200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:93662600-93667200	Weak transcription	NHEK	skin
30	chr10:93662600-93667400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:93662800-93666200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:93662800-93666200	Weak transcription	Fetal Brain Male	brain
33	chr10:93662800-93666200	Weak transcription	Dnd41	blood
34	chr10:93662800-93667000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:93662800-93667000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr10:93662800-93667000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:93662800-93667000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:93662800-93667000	Weak transcription	Placenta	Placenta
39	chr10:93662800-93667000	Weak transcription	A549	lung
40	chr10:93662800-93667000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr10:93662800-93667200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:93662800-93667400	Weak transcription	HMEC	breast
43	chr10:93662800-93667400	Weak transcription	NHLF	lung
44	chr10:93663000-93667000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:93663000-93667600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:93663600-93667800	Weak transcription	Gastric	stomach
47	chr10:93663800-93667800	Weak transcription	Fetal Intestine Large	intestine
48	chr10:93664000-93667000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:93664000-93667000	Weak transcription	Fetal Stomach	stomach
50	chr10:93664200-93667400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links