Variant report

Variant	rs2138701
Chromosome Location	chr10:93774951-93774952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93768343..93770359-chr10:93773791..93775387,2	K562	blood:
2	chr10:93751650..93753642-chr10:93774282..93776982,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1107947	0.82[ASN][1000 genomes]
rs11812701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816821	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817194	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818808	0.89[ASN][1000 genomes]
rs11818872	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.89[ASN][1000 genomes]
rs2421796	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676804	0.82[EUR][1000 genomes]
rs35535933	1.00[ASN][1000 genomes]
rs45611639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565820	0.89[ASN][1000 genomes]
rs55732480	0.89[ASN][1000 genomes]
rs61874749	0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs7071217	0.89[ASN][1000 genomes]
rs7072906	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094274	0.89[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72807247	0.89[ASN][1000 genomes]
rs72807254	0.89[ASN][1000 genomes]
rs72807268	0.89[ASN][1000 genomes]
rs72807269	0.89[ASN][1000 genomes]
rs72807274	0.89[ASN][1000 genomes]
rs72807278	0.89[ASN][1000 genomes]
rs72807282	0.89[ASN][1000 genomes]
rs72807288	0.89[ASN][1000 genomes]
rs72823181	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823185	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823189	0.90[ASN][1000 genomes]
rs72823191	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825306	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72825329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs7917198	0.90[ASN][1000 genomes]
rs7917450	0.90[ASN][1000 genomes]
rs833363	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
3	chr10:93736200-93784400	Weak transcription	Pancreas	Pancrea
4	chr10:93743000-93795000	Weak transcription	Stomach Mucosa	stomach
5	chr10:93743600-93786400	Weak transcription	Aorta	Aorta
6	chr10:93745000-93797200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:93745600-93778800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:93749600-93792200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:93752000-93777400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93753600-93782400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:93754600-93783800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:93754800-93782000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:93755800-93784200	Weak transcription	Esophagus	oesophagus
14	chr10:93757600-93776200	Weak transcription	Fetal Kidney	kidney
15	chr10:93757800-93785000	Weak transcription	Small Intestine	intestine
16	chr10:93761200-93794600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:93763400-93778600	Weak transcription	Fetal Heart	heart
18	chr10:93764200-93781000	Strong transcription	GM12878-XiMat	blood
19	chr10:93765600-93792200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:93765800-93786400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:93766000-93777400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:93767000-93784600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:93767400-93779800	Strong transcription	Fetal Intestine Large	intestine
24	chr10:93767400-93790000	Strong transcription	Fetal Thymus	thymus
25	chr10:93767600-93791000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:93767600-93794000	Strong transcription	Primary B cells from cord blood	blood
27	chr10:93768000-93792800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:93768000-93793000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr10:93768000-93793200	Strong transcription	Placenta	Placenta
30	chr10:93768200-93796800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:93768400-93775000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:93768400-93786400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:93768600-93779400	Strong transcription	Stomach Smooth Muscle	stomach
34	chr10:93768600-93790000	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr10:93769400-93776000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:93769600-93793600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:93769600-93793600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:93770200-93783000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:93770400-93775000	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr10:93770400-93775800	Weak transcription	Brain Anterior Caudate	brain
41	chr10:93770400-93778000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:93770400-93785000	Weak transcription	Fetal Brain Male	brain
43	chr10:93770400-93794000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:93770600-93776800	Weak transcription	HSMMtube	muscle
45	chr10:93770600-93779200	Weak transcription	Brain Angular Gyrus	brain
46	chr10:93770800-93777200	Weak transcription	K562	blood
47	chr10:93771000-93776000	Weak transcription	NHDF-Ad	bronchial
48	chr10:93771400-93775200	Strong transcription	Fetal Lung	lung
49	chr10:93771800-93794800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:93772000-93794400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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