Variant report

Variant	rs72807288
Chromosome Location	chr10:94042448-94042449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11818808	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs17364211	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs4565820	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55732480	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071217	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094274	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807234	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807240	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807247	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807278	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7899706	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs833363	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94020200-94049800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:94025800-94049800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:94032800-94043800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94039200-94048800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:94039200-94049600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:94039400-94043000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:94039400-94043200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:94039400-94044000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:94039400-94044000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:94039600-94044000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:94039600-94044200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:94039600-94044200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:94039800-94049600	Weak transcription	Right Atrium	heart
14	chr10:94040000-94044000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:94040000-94048600	Weak transcription	Lung	lung
16	chr10:94040400-94044200	Weak transcription	Psoas Muscle	Psoas

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