Variant report

Variant	rs72807247
Chromosome Location	chr10:93933513-93933514
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11812701	0.89[ASN][1000 genomes]
rs11816821	0.89[ASN][1000 genomes]
rs11817194	0.89[ASN][1000 genomes]
rs11817266	0.89[ASN][1000 genomes]
rs11818046	0.89[ASN][1000 genomes]
rs11818808	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs11819184	0.89[ASN][1000 genomes]
rs17364211	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs4565820	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732480	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071217	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	0.89[ASN][1000 genomes]
rs7094274	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807234	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807240	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807278	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807288	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823181	0.89[ASN][1000 genomes]
rs72823185	0.89[ASN][1000 genomes]
rs72823191	0.89[ASN][1000 genomes]
rs72823200	0.89[ASN][1000 genomes]
rs72823201	0.89[ASN][1000 genomes]
rs72825305	0.89[ASN][1000 genomes]
rs72825306	0.89[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7899706	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833363	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
2	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:93926800-93941200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:93926800-93941200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93926800-93942000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
8	chr10:93927000-93933800	Weak transcription	Brain Substantia Nigra	brain
9	chr10:93927000-93935000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:93927000-93938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:93927000-93940200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:93927000-93940600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:93927000-93947600	Weak transcription	Primary B cells from cord blood	blood
14	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
15	chr10:93927000-93966200	Weak transcription	Ovary	ovary
16	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:93927200-93935400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
19	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:93927400-93933800	Weak transcription	Left Ventricle	heart
21	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
25	chr10:93928400-93936200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr10:93928600-93942600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:93928800-93949000	Weak transcription	Liver	Liver
28	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
29	chr10:93929400-93967800	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:93929600-93934000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:93929600-93938800	Weak transcription	Fetal Stomach	stomach
32	chr10:93930000-93935000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:93930000-93958200	Weak transcription	Hela-S3	cervix
34	chr10:93931200-93933800	Weak transcription	Right Ventricle	heart
35	chr10:93932400-93940800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr10:93933000-93940400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:93933200-93941400	Weak transcription	Fetal Heart	heart
38	chr10:93933400-93934000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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