Variant report

Variant	rs11818872
Chromosome Location	chr10:93798296-93798297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1107947	0.82[ASN][1000 genomes]
rs11812701	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816821	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817194	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817266	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818046	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818808	0.89[ASN][1000 genomes]
rs11819184	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.89[ASN][1000 genomes]
rs2138701	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421796	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35535933	1.00[ASN][1000 genomes]
rs45611639	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565820	0.89[ASN][1000 genomes]
rs55732480	0.89[ASN][1000 genomes]
rs61874749	0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs7071217	0.89[ASN][1000 genomes]
rs7072906	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094274	0.89[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72807247	0.89[ASN][1000 genomes]
rs72807254	0.89[ASN][1000 genomes]
rs72807268	0.89[ASN][1000 genomes]
rs72807269	0.89[ASN][1000 genomes]
rs72807274	0.89[ASN][1000 genomes]
rs72807278	0.89[ASN][1000 genomes]
rs72807282	0.89[ASN][1000 genomes]
rs72807288	0.89[ASN][1000 genomes]
rs72823181	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823185	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823189	0.90[ASN][1000 genomes]
rs72823191	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823200	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823201	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825305	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825306	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825315	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72825329	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs7917198	0.90[ASN][1000 genomes]
rs7917450	0.90[ASN][1000 genomes]
rs833363	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93774600-93805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93785400-93802000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93785800-93807600	Weak transcription	Pancreas	Pancrea
5	chr10:93786600-93807800	Weak transcription	Fetal Heart	heart
6	chr10:93786800-93804800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93786800-93807600	Weak transcription	Aorta	Aorta
8	chr10:93787200-93805400	Weak transcription	Right Ventricle	heart
9	chr10:93787200-93812200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:93787400-93807600	Weak transcription	Spleen	Spleen
11	chr10:93787400-93811200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:93787400-93818400	Weak transcription	Colonic Mucosa	Colon
13	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
14	chr10:93787600-93798600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:93787600-93799200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:93787600-93828000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:93788000-93812000	Weak transcription	Brain Anterior Caudate	brain
18	chr10:93788200-93804200	Weak transcription	NHLF	lung
19	chr10:93788400-93814200	Weak transcription	HepG2	liver
20	chr10:93789800-93816400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:93790000-93798600	Weak transcription	NHDF-Ad	bronchial
22	chr10:93791000-93800000	Weak transcription	A549	lung
23	chr10:93791800-93838400	Weak transcription	Brain Substantia Nigra	brain
24	chr10:93792000-93805200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:93792200-93798600	Weak transcription	HSMMtube	muscle
26	chr10:93792200-93805400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:93792200-93807600	Weak transcription	Left Ventricle	heart
28	chr10:93792400-93801000	Weak transcription	Thymus	Thymus
29	chr10:93792400-93809600	Weak transcription	NHEK	skin
30	chr10:93792400-93814800	Weak transcription	Hela-S3	cervix
31	chr10:93792600-93807600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:93792800-93807800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:93792800-93837800	Weak transcription	Brain Angular Gyrus	brain
34	chr10:93793000-93807600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:93793000-93814600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:93793200-93801200	Weak transcription	Fetal Kidney	kidney
37	chr10:93793200-93812000	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:93793200-93812400	Weak transcription	Placenta	Placenta
39	chr10:93793600-93805000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:93793600-93805400	Weak transcription	Lung	lung
41	chr10:93793600-93807600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:93793800-93802000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:93793800-93802400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr10:93793800-93804400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:93793800-93805200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:93793800-93807600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr10:93793800-93811400	Weak transcription	Ovary	ovary
48	chr10:93794000-93800600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:93794000-93807600	Weak transcription	Primary B cells from cord blood	blood
50	chr10:93794200-93810800	Weak transcription	Rectal Mucosa Donor 31	rectum

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