Variant report

Variant	rs72823181
Chromosome Location	chr10:93688050-93688051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93687610..93690997-chr10:93694817..93697493,3	K562	blood:
2	chr10:93669118..93670759-chr10:93686522..93689005,2	MCF-7	breast:
3	chr10:93682093..93684871-chr10:93687477..93689092,2	MCF-7	breast:
4	chr10:93685141..93688099-chr10:93690647..93693379,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1107947	0.82[ASN][1000 genomes]
rs11812701	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816821	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817194	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817266	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818046	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819184	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.89[ASN][1000 genomes]
rs2138701	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421796	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35535933	1.00[ASN][1000 genomes]
rs45611639	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565820	0.89[ASN][1000 genomes]
rs61874749	0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs7071217	0.89[ASN][1000 genomes]
rs7072906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094274	0.89[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72807247	0.89[ASN][1000 genomes]
rs72807254	0.89[ASN][1000 genomes]
rs72823185	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823189	0.90[ASN][1000 genomes]
rs72823191	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823200	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823201	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825305	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825306	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825315	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72825329	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs7917198	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7917450	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833363	0.89[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93682800-93689400	Active TSS	GM12878-XiMat	blood
2	chr10:93684200-93688600	Weak transcription	Pancreas	Pancrea
3	chr10:93684200-93691200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:93684200-93691200	Weak transcription	Gastric	stomach
5	chr10:93684200-93691800	Weak transcription	Lung	lung
6	chr10:93684200-93692600	Weak transcription	Spleen	Spleen
7	chr10:93684200-93694000	Weak transcription	Esophagus	oesophagus
8	chr10:93684400-93691200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:93684400-93692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93684600-93688200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:93684800-93689000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:93684800-93691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:93685000-93688600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:93685000-93688600	Weak transcription	Right Atrium	heart
16	chr10:93685000-93690000	Weak transcription	Fetal Stomach	stomach
17	chr10:93685000-93690000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:93685000-93690200	Weak transcription	Fetal Intestine Large	intestine
19	chr10:93685000-93690200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:93685000-93690200	Weak transcription	Stomach Mucosa	stomach
21	chr10:93685000-93691200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:93685000-93691200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:93685000-93691200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:93685000-93691200	Weak transcription	Brain Anterior Caudate	brain
25	chr10:93685000-93691200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:93685000-93691200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:93685000-93691200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:93685000-93691200	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:93685000-93691200	Weak transcription	Placenta	Placenta
30	chr10:93685000-93691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:93685000-93691400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:93685000-93691400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:93685000-93691400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:93685000-93691400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:93685000-93691400	Weak transcription	Fetal Intestine Small	intestine
36	chr10:93685000-93691400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:93685000-93695600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:93685000-93695800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:93685000-93696000	Weak transcription	Aorta	Aorta
40	chr10:93685000-93696000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr10:93685000-93696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
43	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
45	chr10:93685200-93689600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:93685200-93690000	Weak transcription	NHDF-Ad	bronchial
47	chr10:93685200-93690200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr10:93685200-93691200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:93685200-93691200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:93685200-93691200	Weak transcription	Adipose Nuclei	Adipose

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