Variant report

Variant	rs11812701
Chromosome Location	chr10:93732286-93732287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93730882..93732889-chr10:93741428..93743310,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1107947	0.82[ASN][1000 genomes]
rs11816821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817194	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817266	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818808	0.89[ASN][1000 genomes]
rs11818872	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2138701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421796	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676804	0.81[EUR][1000 genomes]
rs35535933	1.00[ASN][1000 genomes]
rs45611639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565820	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs55732480	0.89[ASN][1000 genomes]
rs61874749	0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs7071217	0.89[ASN][1000 genomes]
rs7072906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093658	1.00[CHB][hapmap]
rs7094274	0.89[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72807247	0.89[ASN][1000 genomes]
rs72807254	0.89[ASN][1000 genomes]
rs72807268	0.89[ASN][1000 genomes]
rs72807269	0.89[ASN][1000 genomes]
rs72823181	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823185	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823189	0.90[ASN][1000 genomes]
rs72823191	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825306	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72825329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs7917198	0.90[ASN][1000 genomes]
rs7917450	0.90[ASN][1000 genomes]
rs833363	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
2	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
3	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
5	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
6	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:93704800-93807400	Weak transcription	Gastric	stomach
9	chr10:93708000-93732600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:93708600-93733200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:93709400-93740000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:93710000-93750200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:93710400-93736600	Strong transcription	Fetal Thymus	thymus
15	chr10:93710800-93736200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:93711000-93732400	Strong transcription	Adipose Nuclei	Adipose
17	chr10:93711000-93732600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:93713600-93733200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:93713600-93744400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:93714000-93732400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:93714000-93734400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:93714400-93743800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:93714600-93768000	Weak transcription	Right Ventricle	heart
24	chr10:93715400-93741400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:93718400-93734200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:93718400-93774000	Weak transcription	Spleen	Spleen
27	chr10:93719000-93734200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:93719400-93761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:93720000-93735400	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:93720000-93741400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:93720000-93757400	Weak transcription	Small Intestine	intestine
32	chr10:93720200-93734200	Weak transcription	NHLF	lung
33	chr10:93720200-93741400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:93720400-93741800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:93720400-93757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:93720600-93742600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:93720600-93742800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:93721200-93734200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:93721200-93741200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:93721200-93742000	Weak transcription	Fetal Kidney	kidney
41	chr10:93721400-93742000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:93721600-93741600	Weak transcription	Brain Anterior Caudate	brain
43	chr10:93721600-93743200	Weak transcription	Lung	lung
44	chr10:93722000-93732600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:93722200-93741400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:93722400-93741400	Weak transcription	Thymus	Thymus
47	chr10:93723800-93734200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:93723800-93743000	Weak transcription	Aorta	Aorta
49	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
50	chr10:93724200-93748200	Weak transcription	Psoas Muscle	Psoas

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