Variant report

Variant	rs4565820
Chromosome Location	chr10:93879729-93879730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11812701	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11816821	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11817194	0.89[ASN][1000 genomes]
rs11817266	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11818046	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11818808	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs11819184	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17364211	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs55732480	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7071217	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7093658	0.89[ASN][1000 genomes]
rs7094274	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807240	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807247	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807278	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807288	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72823181	0.89[ASN][1000 genomes]
rs72823185	0.89[ASN][1000 genomes]
rs72823191	0.89[ASN][1000 genomes]
rs72823200	0.89[ASN][1000 genomes]
rs72823201	0.89[ASN][1000 genomes]
rs72825305	0.89[ASN][1000 genomes]
rs72825306	0.89[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7899706	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900237	0.95[EUR][1000 genomes]
rs833363	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
2	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
3	chr10:93862000-93881400	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:93862000-93881400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
6	chr10:93863800-93881400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:93863800-93881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:93867400-93881800	Weak transcription	Stomach Mucosa	stomach
9	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:93870800-93881400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:93871000-93881600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:93871000-93881800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:93871000-93882400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:93871000-93882400	Weak transcription	Primary T cells from cord blood	blood
15	chr10:93871000-93887200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr10:93871400-93881400	Weak transcription	Brain Anterior Caudate	brain
17	chr10:93871600-93882000	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:93871800-93881400	Weak transcription	Aorta	Aorta
19	chr10:93871800-93881600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:93871800-93884400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr10:93872400-93881400	Weak transcription	Left Ventricle	heart
22	chr10:93873000-93881400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:93873600-93881400	Weak transcription	Ovary	ovary
24	chr10:93873600-93882000	Weak transcription	Lung	lung
25	chr10:93873600-93883000	Weak transcription	Right Atrium	heart
26	chr10:93874000-93881400	Weak transcription	Right Ventricle	heart
27	chr10:93874000-93883000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:93874000-93885000	Weak transcription	Small Intestine	intestine
29	chr10:93874200-93881400	Weak transcription	Fetal Heart	heart
30	chr10:93874400-93882800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:93874600-93883000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:93875000-93882600	Weak transcription	Fetal Intestine Large	intestine
34	chr10:93875000-93883800	Weak transcription	Fetal Intestine Small	intestine
35	chr10:93878200-93885000	Enhancers	Liver	Liver
36	chr10:93878400-93881600	Enhancers	HepG2	liver
37	chr10:93878800-93881400	Weak transcription	Pancreas	Pancrea
38	chr10:93878800-93881800	Weak transcription	Brain Angular Gyrus	brain
39	chr10:93879000-93881600	Weak transcription	Gastric	stomach
40	chr10:93879200-93881400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:93879400-93881400	Weak transcription	Psoas Muscle	Psoas
42	chr10:93879400-93881600	Weak transcription	Brain Substantia Nigra	brain
43	chr10:93879400-93882000	Weak transcription	Adipose Nuclei	Adipose

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