Variant report

Variant	rs72807234
Chromosome Location	chr10:93896342-93896343
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11812701	0.89[ASN][1000 genomes]
rs11816821	0.89[ASN][1000 genomes]
rs11817194	0.89[ASN][1000 genomes]
rs11817266	0.89[ASN][1000 genomes]
rs11818046	0.89[ASN][1000 genomes]
rs11818808	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs11819184	0.89[ASN][1000 genomes]
rs17364211	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs4565820	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732480	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071217	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	0.89[ASN][1000 genomes]
rs7093658	0.89[ASN][1000 genomes]
rs7094274	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807240	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807247	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807278	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807288	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72823181	0.89[ASN][1000 genomes]
rs72823185	0.89[ASN][1000 genomes]
rs72823191	0.89[ASN][1000 genomes]
rs72823200	0.89[ASN][1000 genomes]
rs72823201	0.89[ASN][1000 genomes]
rs72825305	0.89[ASN][1000 genomes]
rs72825306	0.89[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7899706	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900237	0.89[EUR][1000 genomes]
rs833363	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:93884800-93896400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:93884800-93896800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:93885400-93902000	Weak transcription	NHLF	lung
7	chr10:93885400-93902200	Weak transcription	Brain Angular Gyrus	brain
8	chr10:93885400-93902200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:93885400-93902400	Weak transcription	Brain Substantia Nigra	brain
10	chr10:93885400-93906400	Weak transcription	Aorta	Aorta
11	chr10:93885400-93906600	Weak transcription	Spleen	Spleen
12	chr10:93885400-93908400	Weak transcription	Lung	lung
13	chr10:93885600-93897800	Weak transcription	Gastric	stomach
14	chr10:93885600-93902200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:93885800-93896600	Weak transcription	Fetal Stomach	stomach
16	chr10:93885800-93905600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:93886000-93902000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:93886200-93896800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:93886200-93896800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:93886200-93902200	Weak transcription	Brain Anterior Caudate	brain
21	chr10:93886200-93906000	Weak transcription	Esophagus	oesophagus
22	chr10:93886200-93906400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:93886200-93906600	Weak transcription	Right Ventricle	heart
24	chr10:93886200-93907800	Weak transcription	Psoas Muscle	Psoas
25	chr10:93886200-93910800	Weak transcription	Pancreas	Pancrea
26	chr10:93886200-93911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:93886400-93896600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:93886400-93901800	Weak transcription	Hela-S3	cervix
29	chr10:93887400-93902200	Weak transcription	Left Ventricle	heart
30	chr10:93889000-93901800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:93891400-93902400	Weak transcription	HepG2	liver
32	chr10:93891400-93906600	Weak transcription	Liver	Liver
33	chr10:93891600-93896600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr10:93892200-93902200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr10:93892400-93896600	Weak transcription	Adipose Nuclei	Adipose
36	chr10:93892600-93911000	Weak transcription	Fetal Heart	heart
37	chr10:93893600-93901400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr10:93893800-93899400	Weak transcription	Fetal Intestine Large	intestine
39	chr10:93894400-93896600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:93894400-93896800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:93895000-93909000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:93895400-93906800	Weak transcription	Brain Germinal Matrix	brain
43	chr10:93895600-93901800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:93895600-93902600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:93896000-93902000	Weak transcription	Osteobl	bone
46	chr10:93896200-93897000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:93896200-93898200	Strong transcription	Primary monocytes fromperipheralblood	blood

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