Variant report

Variant	rs7071217
Chromosome Location	chr10:93939162-93939163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11812701	0.89[ASN][1000 genomes]
rs11816821	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11817194	0.89[ASN][1000 genomes]
rs11817266	0.89[ASN][1000 genomes]
rs11818046	0.89[ASN][1000 genomes]
rs11818808	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs11819184	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17364211	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.82[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap];0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs4565820	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732480	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	0.89[ASN][1000 genomes]
rs7094274	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807234	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807240	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807247	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807278	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807288	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823181	0.89[ASN][1000 genomes]
rs72823185	0.89[ASN][1000 genomes]
rs72823191	0.89[ASN][1000 genomes]
rs72823200	0.89[ASN][1000 genomes]
rs72823201	0.89[ASN][1000 genomes]
rs72825305	0.89[ASN][1000 genomes]
rs72825306	0.89[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7899706	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833363	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
2	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:93926800-93941200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:93926800-93941200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93926800-93942000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
8	chr10:93927000-93940200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:93927000-93940600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:93927000-93947600	Weak transcription	Primary B cells from cord blood	blood
11	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:93927000-93966200	Weak transcription	Ovary	ovary
13	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
15	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
20	chr10:93928600-93942600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:93928800-93949000	Weak transcription	Liver	Liver
22	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
23	chr10:93929400-93967800	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:93930000-93958200	Weak transcription	Hela-S3	cervix
25	chr10:93932400-93940800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:93933000-93940400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:93933200-93941400	Weak transcription	Fetal Heart	heart
28	chr10:93934000-93940400	Weak transcription	Brain Substantia Nigra	brain
29	chr10:93934000-93940600	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr10:93934200-93940200	Weak transcription	Psoas Muscle	Psoas
31	chr10:93934200-93949400	Weak transcription	Lung	lung
32	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:93935600-93940200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:93935600-93941400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:93935800-93940400	Weak transcription	Left Ventricle	heart
36	chr10:93936400-93939400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:93936400-93941200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:93936600-93941200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr10:93936600-93941400	Weak transcription	Fetal Lung	lung
40	chr10:93936600-93958000	Weak transcription	Small Intestine	intestine
41	chr10:93937200-93946600	Weak transcription	GM12878-XiMat	blood
42	chr10:93937200-93950600	Weak transcription	HepG2	liver
43	chr10:93937400-93941200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:93937400-93941400	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:93938000-93940200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:93938800-93940600	Enhancers	Fetal Stomach	stomach

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