Variant report

Variant	rs11818808
Chromosome Location	chr10:93981089-93981090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11812701	0.89[ASN][1000 genomes]
rs11816821	0.89[ASN][1000 genomes]
rs11817194	0.89[ASN][1000 genomes]
rs11817266	0.89[ASN][1000 genomes]
rs11818046	0.89[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs11819184	0.89[ASN][1000 genomes]
rs17364211	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs4565820	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55732480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071217	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094274	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807234	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807240	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807247	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807278	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807288	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823191	0.89[ASN][1000 genomes]
rs72823200	0.89[ASN][1000 genomes]
rs72823201	0.89[ASN][1000 genomes]
rs72825305	0.89[ASN][1000 genomes]
rs72825306	0.89[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7899706	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs833363	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	esv2761614	chr10:93960695-93981177	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
2	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
3	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:93959000-93985800	Weak transcription	Brain Substantia Nigra	brain
5	chr10:93961000-93990800	Weak transcription	Spleen	Spleen
6	chr10:93964200-93993000	Weak transcription	Fetal Brain Female	brain
7	chr10:93964200-93996000	Weak transcription	Brain Germinal Matrix	brain
8	chr10:93964200-93997600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:93964400-93982400	Weak transcription	HSMM	muscle
10	chr10:93966400-93986200	Weak transcription	Ovary	ovary
11	chr10:93967400-93986200	Weak transcription	Fetal Heart	heart
12	chr10:93967600-93986200	Weak transcription	Left Ventricle	heart
13	chr10:93967600-93990800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:93968400-93997000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:93968600-93989200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:93969200-93982400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:93969200-93997800	Weak transcription	Pancreas	Pancrea
18	chr10:93969200-93998600	Weak transcription	Lung	lung
19	chr10:93969600-93997800	Weak transcription	Esophagus	oesophagus
20	chr10:93971000-93990800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:93971200-93982600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:93971200-93984200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:93971200-93990400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:93971400-93982400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:93971400-93982600	Weak transcription	Osteobl	bone
26	chr10:93971400-93993200	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:93971400-93997800	Weak transcription	Stomach Mucosa	stomach
28	chr10:93971600-93982000	Weak transcription	HMEC	breast
29	chr10:93971600-93982400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:93971600-93988000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:93971600-93989000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr10:93971600-93997000	Weak transcription	Adipose Nuclei	Adipose
33	chr10:93973000-93982200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:93973000-93997000	Weak transcription	Liver	Liver
35	chr10:93974800-93991600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:93975400-93998000	Weak transcription	Colonic Mucosa	Colon
37	chr10:93975600-93997000	Weak transcription	HepG2	liver
38	chr10:93976600-93999000	Weak transcription	Aorta	Aorta
39	chr10:93976800-93984000	Weak transcription	Brain Anterior Caudate	brain
40	chr10:93976800-93989000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:93976800-93989400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:93976800-93990600	Weak transcription	Right Ventricle	heart
43	chr10:93976800-93997200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:93976800-93998800	Weak transcription	Gastric	stomach
45	chr10:93977000-93998400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:93977600-93998000	Weak transcription	Primary B cells from cord blood	blood
47	chr10:93978200-93990600	Weak transcription	Fetal Stomach	stomach
48	chr10:93978600-93985800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:93979000-93991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:93979200-93994600	Weak transcription	Fetal Brain Male	brain

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