Variant report

Variant	rs7899706
Chromosome Location	chr10:93864162-93864163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11812701	0.89[ASN][1000 genomes]
rs11816821	0.89[ASN][1000 genomes]
rs11817194	0.89[ASN][1000 genomes]
rs11817266	0.89[ASN][1000 genomes]
rs11818046	0.89[ASN][1000 genomes]
rs11818808	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs11819184	0.89[ASN][1000 genomes]
rs17364211	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs4565820	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732480	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7071217	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	0.89[ASN][1000 genomes]
rs7093658	0.89[ASN][1000 genomes]
rs7094274	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807234	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807240	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807247	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807278	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807288	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72823181	0.89[ASN][1000 genomes]
rs72823185	0.89[ASN][1000 genomes]
rs72823191	0.89[ASN][1000 genomes]
rs72823200	0.89[ASN][1000 genomes]
rs72823201	0.89[ASN][1000 genomes]
rs72825305	0.89[ASN][1000 genomes]
rs72825306	0.89[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7900237	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs833363	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
2	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
3	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
4	chr10:93859400-93874800	Weak transcription	Fetal Intestine Large	intestine
5	chr10:93861000-93864400	Enhancers	HepG2	liver
6	chr10:93861000-93873600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:93861400-93872600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:93861400-93879000	Weak transcription	Adipose Nuclei	Adipose
9	chr10:93861800-93869800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:93862000-93866800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:93862000-93867200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:93862000-93869400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:93862000-93874200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:93862000-93881400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:93862000-93881400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
17	chr10:93862200-93866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:93862200-93866800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:93862200-93867400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:93862400-93867400	Weak transcription	K562	blood
21	chr10:93862400-93868800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:93862600-93870000	Weak transcription	NHLF	lung
23	chr10:93862800-93873200	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:93863000-93867200	Weak transcription	Pancreas	Pancrea
25	chr10:93863000-93870000	Weak transcription	Psoas Muscle	Psoas
26	chr10:93863000-93870200	Weak transcription	Primary T cells from cord blood	blood
27	chr10:93863000-93878600	Weak transcription	Gastric	stomach
28	chr10:93863200-93867200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:93863200-93867400	Weak transcription	Aorta	Aorta
30	chr10:93863200-93869400	Weak transcription	Brain Substantia Nigra	brain
31	chr10:93863400-93866600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:93863400-93867000	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:93863400-93867200	Weak transcription	Left Ventricle	heart
34	chr10:93863400-93867200	Weak transcription	Right Atrium	heart
35	chr10:93863400-93867600	Enhancers	Liver	Liver
36	chr10:93863400-93870000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:93863600-93866800	Weak transcription	Fetal Heart	heart
38	chr10:93863600-93866800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:93863600-93867200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:93863600-93867200	Weak transcription	Right Ventricle	heart
41	chr10:93863600-93869600	Weak transcription	HSMM	muscle
42	chr10:93863600-93870000	Weak transcription	Small Intestine	intestine
43	chr10:93863800-93867200	Weak transcription	Brain Angular Gyrus	brain
44	chr10:93863800-93867200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:93863800-93869800	Weak transcription	Brain Anterior Caudate	brain
46	chr10:93863800-93879200	Weak transcription	GM12878-XiMat	blood
47	chr10:93863800-93881400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:93863800-93881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:93864000-93865600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:93864000-93869400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links