Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93656251..93659879-chr10:93667036..93669685,4	MCF-7	breast:
2	chr10:93649585..93651720-chr10:93654975..93657870,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736066	0.90[ASN][1000 genomes]
rs10748570	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1107947	0.82[ASN][1000 genomes]
rs11812701	1.00[CHB][hapmap]
rs11816821	1.00[CHB][hapmap]
rs11817266	1.00[CHB][hapmap]
rs11818046	1.00[CHB][hapmap]
rs11819184	1.00[CHB][hapmap]
rs1417257	0.90[ASN][1000 genomes]
rs1538832	0.90[ASN][1000 genomes]
rs17347260	0.90[ASN][1000 genomes]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.89[ASN][1000 genomes]
rs17433251	0.90[ASN][1000 genomes]
rs1772181	0.90[ASN][1000 genomes]
rs1772186	0.90[ASN][1000 genomes]
rs1772188	0.90[ASN][1000 genomes]
rs2258946	0.89[ASW][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes]
rs2421705	0.90[ASN][1000 genomes]
rs2421706	0.90[ASN][1000 genomes]
rs4565820	0.89[ASN][1000 genomes]
rs61874701	0.90[ASN][1000 genomes]
rs61874749	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs6583792	0.90[ASN][1000 genomes]
rs7072906	1.00[CHB][hapmap]
rs7089495	0.92[MEX][hapmap];0.90[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72823162	0.90[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs7912830	0.92[MEX][hapmap];0.90[ASN][1000 genomes]
rs7917198	0.90[ASN][1000 genomes]
rs7917450	0.90[ASN][1000 genomes]
rs833363	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7093658	TPM2	trans	lymphoblastoid	seeQTL
rs7093658	NOC3L	cis	parietal	SCAN
rs7093658	BTAF1	cis	cerebellum	SCAN
rs7093658	LIPN	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
2	chr10:93652200-93658000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:93656400-93658400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93656800-93661400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:93657200-93657600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:93657200-93657600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:93657200-93657800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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