Variant report

Variant	rs11817266
Chromosome Location	chr10:93724588-93724589
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93723503..93725381-chr10:93735083..93737013,2	MCF-7	breast:
2	chr10:93723748..93725445-chr10:93727190..93729264,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1107947	0.82[ASN][1000 genomes]
rs11812701	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817194	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818808	0.89[ASN][1000 genomes]
rs11818872	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2138701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421796	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676804	0.81[EUR][1000 genomes]
rs35535933	1.00[ASN][1000 genomes]
rs45611639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565820	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs55732480	0.89[ASN][1000 genomes]
rs61874749	0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs7071217	0.89[ASN][1000 genomes]
rs7072906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093658	1.00[CHB][hapmap]
rs7094274	0.89[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72807247	0.89[ASN][1000 genomes]
rs72807254	0.89[ASN][1000 genomes]
rs72807268	0.89[ASN][1000 genomes]
rs72807269	0.89[ASN][1000 genomes]
rs72823181	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823185	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823189	0.90[ASN][1000 genomes]
rs72823191	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825306	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72825329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs7917198	0.90[ASN][1000 genomes]
rs7917450	0.90[ASN][1000 genomes]
rs833363	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
2	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
3	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
5	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
6	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:93704800-93807400	Weak transcription	Gastric	stomach
9	chr10:93708000-93728800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:93708000-93732600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:93708600-93727200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:93708600-93730600	Strong transcription	Liver	Liver
13	chr10:93708600-93733200	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:93708800-93729000	Strong transcription	Dnd41	blood
15	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:93709200-93731000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:93709400-93740000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:93710000-93750200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:93710400-93736600	Strong transcription	Fetal Thymus	thymus
20	chr10:93710600-93728600	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr10:93710600-93729000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:93710600-93729600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:93710600-93730400	Strong transcription	Fetal Intestine Large	intestine
24	chr10:93710800-93724600	Strong transcription	NHDF-Ad	bronchial
25	chr10:93710800-93728400	Strong transcription	Primary B cells from cord blood	blood
26	chr10:93710800-93736200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:93711000-93728400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:93711000-93728600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:93711000-93728600	Strong transcription	NH-A	brain
30	chr10:93711000-93729800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr10:93711000-93730200	Strong transcription	Placenta	Placenta
32	chr10:93711000-93730600	Strong transcription	HepG2	liver
33	chr10:93711000-93731000	Strong transcription	Duodenum Mucosa	Duodenum
34	chr10:93711000-93731200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:93711000-93732400	Strong transcription	Adipose Nuclei	Adipose
36	chr10:93711000-93732600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:93711200-93729400	Strong transcription	HSMM	muscle
38	chr10:93711200-93731200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:93711400-93724800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:93713600-93733200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:93713600-93744400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:93713800-93729600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:93714000-93732400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:93714000-93734400	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:93714400-93743800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:93714600-93768000	Weak transcription	Right Ventricle	heart
47	chr10:93715400-93741400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr10:93715800-93724800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:93716000-93724800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:93716000-93725200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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