Variant report

Variant	rs72807240
Chromosome Location	chr10:93918718-93918719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr10:93918309-93918950	ECC-1	luminal epithelium:	n/a	n/a
2	EP300	chr10:93918378-93918829	ECC-1	luminal epithelium:	n/a	chr10:93918537-93918551

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93916798..93918938-chr10:93920559..93922352,2	K562	blood:

Variant related genes	Relation type
ENSG00000264076	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11812701	0.89[ASN][1000 genomes]
rs11816821	0.89[ASN][1000 genomes]
rs11817194	0.89[ASN][1000 genomes]
rs11817266	0.89[ASN][1000 genomes]
rs11818046	0.89[ASN][1000 genomes]
rs11818808	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs11819184	0.89[ASN][1000 genomes]
rs17364211	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs4565820	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732480	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071217	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	0.89[ASN][1000 genomes]
rs7093658	0.89[ASN][1000 genomes]
rs7094274	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807234	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807247	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807278	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807288	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823181	0.89[ASN][1000 genomes]
rs72823185	0.89[ASN][1000 genomes]
rs72823191	0.89[ASN][1000 genomes]
rs72823200	0.89[ASN][1000 genomes]
rs72823201	0.89[ASN][1000 genomes]
rs72825305	0.89[ASN][1000 genomes]
rs72825306	0.89[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7899706	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900237	0.82[EUR][1000 genomes]
rs833363	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:93903000-93925600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:93906200-93925600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:93906800-93925600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:93906800-93926600	Weak transcription	Aorta	Aorta
6	chr10:93908600-93926400	Weak transcription	Brain Anterior Caudate	brain
7	chr10:93911800-93926200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:93911800-93926600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:93911800-93926600	Weak transcription	Left Ventricle	heart
10	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
11	chr10:93916400-93926400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:93917200-93926200	Weak transcription	Brain Angular Gyrus	brain
13	chr10:93917400-93923400	Weak transcription	NHDF-Ad	bronchial
14	chr10:93917400-93926200	Weak transcription	Ovary	ovary
15	chr10:93917600-93925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:93918000-93918800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:93918200-93926200	Weak transcription	Stomach Smooth Muscle	stomach

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