Variant report

Variant	rs72807278
Chromosome Location	chr10:94026838-94026839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94025454..94026978-chr10:94049778..94051891,2	MCF-7	breast:
2	chr10:94025350..94027932-chr10:94033486..94035351,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11816821	0.89[ASN][1000 genomes]
rs11817194	0.89[ASN][1000 genomes]
rs11818808	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818872	0.89[ASN][1000 genomes]
rs17364211	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17365265	0.87[ASN][1000 genomes]
rs2138701	0.89[ASN][1000 genomes]
rs2421796	0.89[ASN][1000 genomes]
rs35535933	0.89[ASN][1000 genomes]
rs45611639	0.89[ASN][1000 genomes]
rs4565820	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55732480	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071217	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094274	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807234	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72807240	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807242	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807247	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807254	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807268	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807269	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807274	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807282	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807288	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825329	0.89[ASN][1000 genomes]
rs7899706	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs833363	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94018400-94027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:94020200-94049800	Weak transcription	Brain Anterior Caudate	brain
3	chr10:94021200-94039200	Weak transcription	Psoas Muscle	Psoas
4	chr10:94025000-94027800	Enhancers	GM12878-XiMat	blood
5	chr10:94025800-94049800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:94026000-94027400	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:94026000-94028600	Weak transcription	Ovary	ovary
8	chr10:94026200-94027400	Enhancers	Colon Smooth Muscle	Colon
9	chr10:94026200-94028600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:94026600-94038800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:94026800-94027400	Active TSS	Aorta	Aorta
12	chr10:94026800-94027400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr10:94026800-94027600	Enhancers	Fetal Heart	heart

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