Variant report

Variant	rs72823191
Chromosome Location	chr10:93717189-93717190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1107947	0.82[ASN][1000 genomes]
rs11812701	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816821	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817194	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817266	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818046	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818808	0.89[ASN][1000 genomes]
rs11818872	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819184	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.89[ASN][1000 genomes]
rs2138701	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421796	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35535933	1.00[ASN][1000 genomes]
rs45611639	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565820	0.89[ASN][1000 genomes]
rs55732480	0.89[ASN][1000 genomes]
rs61874749	0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs7071217	0.89[ASN][1000 genomes]
rs7072906	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094274	0.89[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72807247	0.89[ASN][1000 genomes]
rs72807254	0.89[ASN][1000 genomes]
rs72823181	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823185	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823189	0.90[ASN][1000 genomes]
rs72823200	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823201	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825305	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825306	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825315	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72825329	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs7917198	0.90[ASN][1000 genomes]
rs7917450	0.90[ASN][1000 genomes]
rs833363	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
3	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
4	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
6	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
8	chr10:93697000-93718000	Weak transcription	Spleen	Spleen
9	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
10	chr10:93697200-93718400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr10:93700800-93717800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:93704000-93723400	Weak transcription	Colonic Mucosa	Colon
15	chr10:93704600-93719600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:93704800-93807400	Weak transcription	Gastric	stomach
17	chr10:93708000-93728800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:93708000-93732600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:93708600-93727200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:93708600-93730600	Strong transcription	Liver	Liver
21	chr10:93708600-93733200	Strong transcription	Primary B cells from peripheral blood	blood
22	chr10:93708800-93729000	Strong transcription	Dnd41	blood
23	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr10:93709200-93731000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:93709400-93740000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:93710000-93750200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:93710200-93724400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:93710400-93736600	Strong transcription	Fetal Thymus	thymus
29	chr10:93710600-93728600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr10:93710600-93729000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:93710600-93729600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:93710600-93730400	Strong transcription	Fetal Intestine Large	intestine
33	chr10:93710800-93724600	Strong transcription	NHDF-Ad	bronchial
34	chr10:93710800-93728400	Strong transcription	Primary B cells from cord blood	blood
35	chr10:93710800-93736200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:93711000-93723800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:93711000-93728400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:93711000-93728600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:93711000-93728600	Strong transcription	NH-A	brain
40	chr10:93711000-93729800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr10:93711000-93730200	Strong transcription	Placenta	Placenta
42	chr10:93711000-93730600	Strong transcription	HepG2	liver
43	chr10:93711000-93731000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr10:93711000-93731200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:93711000-93732400	Strong transcription	Adipose Nuclei	Adipose
46	chr10:93711000-93732600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:93711200-93720200	Strong transcription	Hela-S3	cervix
48	chr10:93711200-93721600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:93711200-93721800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:93711200-93722200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links