Variant report

Variant	rs7095552
Chromosome Location	chr10:93673004-93673005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr10:93672407-93673149	SK-N-SH	brain:	n/a	chr10:93672775-93672789
2	ARID3A	chr10:93672605-93673028	K562	blood:	n/a	n/a
3	RAD21	chr10:93672503-93673049	ECC-1	luminal epithelium:	n/a	chr10:93672771-93672790
4	CTCF	chr10:93672567-93673021	T-47D	breast:	n/a	chr10:93672768-93672789 chr10:93672774-93672790
5	RAD21	chr10:93672528-93673064	A549	lung:	n/a	chr10:93672771-93672790
6	CEBPB	chr10:93672710-93673018	K562	blood:	n/a	chr10:93672912-93672925 chr10:93672912-93672925 chr10:93672913-93672924 chr10:93672912-93672923
7	SMC3	chr10:93672539-93673006	Hela-S3	cervix:	n/a	chr10:93672775-93672789
8	CTCF	chr10:93672860-93673010	HAc	cerebellar:	n/a	n/a
9	CTCF	chr10:93672457-93673214	A549	lung:	n/a	chr10:93672768-93672789 chr10:93672774-93672790
10	FOSL2	chr10:93672506-93673008	SK-N-SH	brain:	n/a	n/a
11	RAD21	chr10:93672478-93673044	HepG2	liver:	n/a	chr10:93672771-93672790
12	RAD21	chr10:93672481-93673128	MCF-7	breast:	n/a	chr10:93672771-93672790
13	CEBPB	chr10:93672758-93673058	HepG2	liver:	n/a	chr10:93672912-93672925 chr10:93672912-93672925 chr10:93672913-93672924 chr10:93672912-93672923
14	MXI1	chr10:93672400-93673176	SK-N-SH	brain:	n/a	n/a
15	RAD21	chr10:93672527-93673013	MCF-7	breast:	n/a	chr10:93672771-93672790
16	RAD21	chr10:93672500-93673067	A549	lung:	n/a	chr10:93672771-93672790
17	CEBPB	chr10:93672599-93673059	IMR90	lung:	n/a	chr10:93672912-93672925 chr10:93672912-93672925 chr10:93672913-93672924 chr10:93672912-93672923
18	RAD21	chr10:93672475-93673096	ECC-1	luminal epithelium:	n/a	chr10:93672771-93672790
19	CEBPB	chr10:93672618-93673045	A549	lung:	n/a	chr10:93672912-93672925 chr10:93672912-93672925 chr10:93672913-93672924 chr10:93672912-93672923
20	RAD21	chr10:93672461-93673162	HCT-116	colon:	n/a	chr10:93672771-93672790
21	CTCF	chr10:93672507-93673132	HCT-116	colon:	n/a	chr10:93672768-93672789 chr10:93672774-93672790
22	CTCF	chr10:93672398-93673238	SK-N-SH	brain:	n/a	chr10:93672768-93672789 chr10:93672774-93672790
23	STAT3	chr10:93672632-93673267	MCF10A-Er-Src	breast:	n/a	chr10:93672648-93672659 chr10:93672650-93672658
24	CTCF	chr10:93672900-93673050	BJ	skin:	n/a	n/a
25	RAD21	chr10:93672461-93673088	HCT-116	colon:	n/a	chr10:93672771-93672790
26	CTCF	chr10:93672596-93673032	HCT-116	colon:	n/a	chr10:93672768-93672789 chr10:93672774-93672790
27	RAD21	chr10:93672398-93673236	SK-N-SH	brain:	n/a	chr10:93672771-93672790
28	MYC	chr10:93672591-93673021	MCF10A-Er-Src	breast:	n/a	chr10:93672710-93672719
29	STAT3	chr10:93672590-93673064	Hela-S3	cervix:	n/a	chr10:93672648-93672659 chr10:93672650-93672658

No.	Distal block	Cell Line	Cell type
1	chr10:93615612..93617203-chr10:93672232..93673263,9	MCF-7	breast:
2	chr10:93616103..93616775-chr10:93672215..93673217,5	MCF-7	breast:
3	chr10:93518180..93519047-chr10:93672190..93673222,5	MCF-7	breast:
4	chr10:93618788..93620998-chr10:93672507..93675323,2	MCF-7	breast:

Variant related genes	Relation type
FGFBP3	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1107947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812701	0.82[ASN][1000 genomes]
rs11816821	0.82[ASN][1000 genomes]
rs11817194	0.82[ASN][1000 genomes]
rs11817266	0.82[ASN][1000 genomes]
rs11818046	0.82[ASN][1000 genomes]
rs11818872	0.82[ASN][1000 genomes]
rs11819184	0.82[ASN][1000 genomes]
rs17349172	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138701	0.82[ASN][1000 genomes]
rs2421796	0.82[ASN][1000 genomes]
rs35535933	0.82[ASN][1000 genomes]
rs45611639	0.82[ASN][1000 genomes]
rs61874749	0.91[ASN][1000 genomes]
rs61874751	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072906	0.82[ASN][1000 genomes]
rs7093658	0.82[ASN][1000 genomes]
rs72823181	0.82[ASN][1000 genomes]
rs72823185	0.82[ASN][1000 genomes]
rs72823191	0.82[ASN][1000 genomes]
rs72823200	0.82[ASN][1000 genomes]
rs72823201	0.82[ASN][1000 genomes]
rs72825305	0.82[ASN][1000 genomes]
rs72825306	0.82[ASN][1000 genomes]
rs72825329	0.82[ASN][1000 genomes]
rs7897761	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917198	0.91[ASN][1000 genomes]
rs7917450	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798947	chr10:93668341-93674933	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7095552	LIPN	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93669400-93682800	Weak transcription	Pancreas	Pancrea
2	chr10:93673000-93673200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:93673000-93673200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:93673000-93673200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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