Variant report

Variant	rs1104012
Chromosome Location	chr10:93819103-93819104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509640	0.80[JPT][hapmap]
rs10786026	0.86[JPT][hapmap]
rs10882019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11817194	0.81[JPT][hapmap]
rs12254369	0.82[JPT][hapmap]
rs12256118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12263532	0.91[JPT][hapmap]
rs17107472	1.00[JPT][hapmap]
rs1711850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1935864	1.00[JPT][hapmap]
rs2048901	0.80[JPT][hapmap]
rs2252200	0.80[JPT][hapmap]
rs2676824	0.80[JPT][hapmap]
rs2792019	0.81[JPT][hapmap]
rs4509678	0.81[JPT][hapmap]
rs4642987	0.80[JPT][hapmap]
rs6583801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7070076	0.80[JPT][hapmap]
rs7909870	0.81[JPT][hapmap]
rs7912721	0.93[JPT][hapmap]
rs833364	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs833365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs833368	0.80[JPT][hapmap]
rs833380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv551923	chr10:93804974-93835969	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
2	chr10:93787600-93828000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:93791800-93838400	Weak transcription	Brain Substantia Nigra	brain
4	chr10:93792800-93837800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:93794400-93837200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:93795800-93824200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:93796200-93840800	Weak transcription	Psoas Muscle	Psoas
8	chr10:93799200-93824000	Weak transcription	HSMMtube	muscle
9	chr10:93806000-93819400	Weak transcription	Brain Germinal Matrix	brain
10	chr10:93808000-93820000	Weak transcription	Fetal Brain Female	brain
11	chr10:93808000-93825400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:93808000-93825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:93808000-93842600	Weak transcription	Fetal Lung	lung
14	chr10:93808200-93842800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:93808400-93825400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:93808400-93834400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:93808400-93844400	Weak transcription	Primary T cells from cord blood	blood
18	chr10:93812200-93835800	Weak transcription	Aorta	Aorta
19	chr10:93812400-93837800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:93812800-93834600	Weak transcription	Adipose Nuclei	Adipose
21	chr10:93812800-93834800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:93812800-93837200	Weak transcription	Ovary	ovary
23	chr10:93812800-93837800	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:93812800-93837800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:93812800-93838200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:93812800-93838800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:93812800-93839800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:93812800-93840600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:93815000-93834600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:93815400-93838200	Weak transcription	Primary B cells from cord blood	blood
31	chr10:93815400-93847200	Weak transcription	Hela-S3	cervix
32	chr10:93816800-93838600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:93817000-93834200	Weak transcription	Pancreas	Pancrea
34	chr10:93817000-93842600	Weak transcription	Gastric	stomach
35	chr10:93817200-93827800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:93817200-93838200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:93817400-93834600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:93817600-93824000	Weak transcription	Right Ventricle	heart
39	chr10:93817600-93827800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:93817600-93834200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:93817600-93837600	Weak transcription	Left Ventricle	heart
42	chr10:93817600-93838600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:93817600-93838600	Weak transcription	Fetal Stomach	stomach
44	chr10:93817600-93840000	Weak transcription	Spleen	Spleen
45	chr10:93817600-93840200	Weak transcription	Esophagus	oesophagus
46	chr10:93817600-93840400	Weak transcription	Fetal Intestine Small	intestine
47	chr10:93817600-93840800	Weak transcription	Lung	lung
48	chr10:93818000-93834200	Weak transcription	Brain Anterior Caudate	brain
49	chr10:93818600-93819600	Enhancers	Liver	Liver
50	chr10:93819000-93819400	Weak transcription	Primary monocytes fromperipheralblood	blood

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