Variant report

Variant	rs17107472
Chromosome Location	chr10:93951793-93951794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10882019	1.00[JPT][hapmap]
rs1104012	1.00[JPT][hapmap]
rs11592691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs11594722	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11595822	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11817194	0.84[JPT][hapmap]
rs12256118	1.00[JPT][hapmap]
rs17107539	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs1711850	1.00[JPT][hapmap]
rs1935864	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs2048901	0.84[JPT][hapmap]
rs2149631	0.80[AMR][1000 genomes]
rs55737168	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6583801	1.00[JPT][hapmap]
rs7070076	0.84[JPT][hapmap]
rs833364	1.00[JPT][hapmap]
rs833365	1.00[JPT][hapmap]
rs833368	0.84[JPT][hapmap]
rs833380	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
2	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
5	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
6	chr10:93927000-93966200	Weak transcription	Ovary	ovary
7	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
14	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
15	chr10:93929400-93967800	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:93930000-93958200	Weak transcription	Hela-S3	cervix
17	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:93936600-93958000	Weak transcription	Small Intestine	intestine
19	chr10:93940200-93971200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:93940600-93958400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:93940600-93970800	Weak transcription	Fetal Stomach	stomach
22	chr10:93941600-93958000	Weak transcription	Brain Anterior Caudate	brain
23	chr10:93941600-93958000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:93941800-93958000	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:93941800-93968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:93941800-93971200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr10:93942200-93953600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:93943600-93958200	Weak transcription	K562	blood
29	chr10:93945200-93954000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:93945800-93963800	Weak transcription	Fetal Brain Female	brain
31	chr10:93946600-93964000	Weak transcription	Left Ventricle	heart
32	chr10:93947400-93954800	Weak transcription	Fetal Heart	heart
33	chr10:93947600-93958200	Weak transcription	Brain Substantia Nigra	brain
34	chr10:93947800-93967800	Weak transcription	GM12878-XiMat	blood
35	chr10:93949000-93961800	Weak transcription	Primary T cells from cord blood	blood
36	chr10:93949800-93958200	Weak transcription	Liver	Liver
37	chr10:93950000-93952400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:93950200-93952200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr10:93950200-93952600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:93951000-93952000	Weak transcription	HepG2	liver

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