Variant report

Variant	rs55737168
Chromosome Location	chr10:93844623-93844624
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93843200..93844774-chr10:93846231..93849117,2	MCF-7	breast:
2	chr10:93842541..93844667-chr10:94333754..94335512,2	K562	blood:

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11186828	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11818152	0.81[ASN][1000 genomes]
rs12256118	0.80[ASN][1000 genomes]
rs1581240	0.86[AMR][1000 genomes]
rs17107472	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1711850	0.80[ASN][1000 genomes]
rs1935864	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7077333	0.80[ASN][1000 genomes]
rs7077506	1.00[AFR][1000 genomes]
rs7916626	0.80[ASN][1000 genomes]
rs833364	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93815400-93847200	Weak transcription	Hela-S3	cervix
2	chr10:93836000-93853200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:93837400-93847600	Weak transcription	HUVEC	blood vessel
4	chr10:93837600-93847200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:93837600-93847600	Weak transcription	Colonic Mucosa	Colon
6	chr10:93839000-93847600	Weak transcription	Placenta	Placenta
7	chr10:93841000-93847400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:93841000-93847400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:93841200-93845000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:93841200-93846800	Weak transcription	Lung	lung
11	chr10:93841200-93847200	Weak transcription	GM12878-XiMat	blood
12	chr10:93841200-93847400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:93841200-93847400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:93841200-93847400	Weak transcription	Fetal Intestine Small	intestine
15	chr10:93841200-93847400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:93841200-93847600	Weak transcription	Fetal Intestine Large	intestine
17	chr10:93841200-93853800	Weak transcription	Pancreas	Pancrea
18	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
19	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
20	chr10:93841400-93847400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:93841400-93847600	Weak transcription	Adipose Nuclei	Adipose
22	chr10:93841400-93847800	Weak transcription	Primary B cells from cord blood	blood
23	chr10:93841600-93847600	Weak transcription	Brain Anterior Caudate	brain
24	chr10:93842800-93847400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:93842800-93848000	Weak transcription	Ovary	ovary
26	chr10:93843200-93847400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:93843200-93847400	Weak transcription	Right Atrium	heart
28	chr10:93843200-93847400	Weak transcription	Stomach Mucosa	stomach
29	chr10:93843200-93847600	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:93843200-93847800	Weak transcription	NHDF-Ad	bronchial
31	chr10:93843200-93848800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:93843400-93847400	Weak transcription	HepG2	liver
33	chr10:93843400-93847600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:93843600-93846400	Weak transcription	Brain Substantia Nigra	brain
35	chr10:93843600-93847200	Weak transcription	Osteobl	bone
36	chr10:93843600-93847400	Weak transcription	Liver	Liver
37	chr10:93843600-93847400	Weak transcription	Brain Angular Gyrus	brain
38	chr10:93843600-93847400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:93843600-93847400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:93843800-93845400	Weak transcription	Left Ventricle	heart
41	chr10:93843800-93846000	Weak transcription	Fetal Heart	heart
42	chr10:93844000-93847200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr10:93844000-93847200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:93844000-93851200	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:93844000-93860800	Weak transcription	Psoas Muscle	Psoas

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