Variant report

Variant	rs11186828
Chromosome Location	chr10:93869195-93869196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93866014..93868686-chr10:93868973..93871759,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882019	0.86[ASN][1000 genomes]
rs11186825	0.92[ASN][1000 genomes]
rs11818152	0.85[ASN][1000 genomes]
rs12256118	0.90[ASN][1000 genomes]
rs1229580	0.86[ASN][1000 genomes]
rs1711850	0.90[ASN][1000 genomes]
rs1935864	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797645	0.86[ASN][1000 genomes]
rs55737168	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55901992	0.88[ASN][1000 genomes]
rs6583801	0.87[ASN][1000 genomes]
rs7077333	0.90[ASN][1000 genomes]
rs7093436	0.88[ASN][1000 genomes]
rs7093730	0.88[ASN][1000 genomes]
rs73314327	0.83[ASN][1000 genomes]
rs7916626	0.90[ASN][1000 genomes]
rs833364	0.90[ASN][1000 genomes]
rs833365	0.87[ASN][1000 genomes]
rs833380	0.86[ASN][1000 genomes]
rs833386	0.83[ASN][1000 genomes]
rs9787645	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
2	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
3	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
4	chr10:93859400-93874800	Weak transcription	Fetal Intestine Large	intestine
5	chr10:93861000-93873600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:93861400-93872600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:93861400-93879000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:93861800-93869800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:93862000-93869400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:93862000-93874200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:93862000-93881400	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:93862000-93881400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
14	chr10:93862600-93870000	Weak transcription	NHLF	lung
15	chr10:93862800-93873200	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:93863000-93870000	Weak transcription	Psoas Muscle	Psoas
17	chr10:93863000-93870200	Weak transcription	Primary T cells from cord blood	blood
18	chr10:93863000-93878600	Weak transcription	Gastric	stomach
19	chr10:93863200-93869400	Weak transcription	Brain Substantia Nigra	brain
20	chr10:93863400-93870000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:93863600-93869600	Weak transcription	HSMM	muscle
22	chr10:93863600-93870000	Weak transcription	Small Intestine	intestine
23	chr10:93863800-93869800	Weak transcription	Brain Anterior Caudate	brain
24	chr10:93863800-93879200	Weak transcription	GM12878-XiMat	blood
25	chr10:93863800-93881400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:93863800-93881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:93864000-93869400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:93865600-93870200	Weak transcription	HepG2	liver
29	chr10:93866200-93869600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:93866800-93869200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:93867000-93870600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:93867400-93869800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:93867400-93876200	Weak transcription	Brain Germinal Matrix	brain
34	chr10:93867400-93881800	Weak transcription	Stomach Mucosa	stomach
35	chr10:93867600-93870000	Weak transcription	Brain Angular Gyrus	brain
36	chr10:93867600-93870000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:93867600-93872600	Weak transcription	Fetal Heart	heart
38	chr10:93867800-93869800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr10:93868000-93869400	Weak transcription	K562	blood
40	chr10:93868000-93869800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:93868000-93870000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:93868000-93870800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr10:93868000-93871000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:93868400-93869600	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:93868400-93870000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:93868400-93874200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:93868800-93870000	Weak transcription	Aorta	Aorta
49	chr10:93868800-93870000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:93868800-93870000	Weak transcription	Pancreas	Pancrea

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