Variant report

Variant	rs833386
Chromosome Location	chr10:93827436-93827437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882019	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186825	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186828	0.83[ASN][1000 genomes]
rs11818152	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12256118	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1229580	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1711850	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935864	0.84[ASN][1000 genomes]
rs2797645	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4486531	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55901992	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6583801	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7077333	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7093436	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7093730	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73314327	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7916626	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833364	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833365	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833380	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787645	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv551923	chr10:93804974-93835969	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
2	chr10:93787600-93828000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:93791800-93838400	Weak transcription	Brain Substantia Nigra	brain
4	chr10:93792800-93837800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:93794400-93837200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:93796200-93840800	Weak transcription	Psoas Muscle	Psoas
7	chr10:93808000-93842600	Weak transcription	Fetal Lung	lung
8	chr10:93808200-93842800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:93808400-93834400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:93808400-93844400	Weak transcription	Primary T cells from cord blood	blood
11	chr10:93812200-93835800	Weak transcription	Aorta	Aorta
12	chr10:93812400-93837800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:93812800-93834600	Weak transcription	Adipose Nuclei	Adipose
14	chr10:93812800-93834800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:93812800-93837200	Weak transcription	Ovary	ovary
16	chr10:93812800-93837800	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:93812800-93837800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:93812800-93838200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:93812800-93838800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:93812800-93839800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:93812800-93840600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:93815000-93834600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:93815400-93838200	Weak transcription	Primary B cells from cord blood	blood
24	chr10:93815400-93847200	Weak transcription	Hela-S3	cervix
25	chr10:93816800-93838600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:93817000-93834200	Weak transcription	Pancreas	Pancrea
27	chr10:93817000-93842600	Weak transcription	Gastric	stomach
28	chr10:93817200-93827800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:93817200-93838200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:93817400-93834600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:93817600-93827800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:93817600-93834200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:93817600-93837600	Weak transcription	Left Ventricle	heart
34	chr10:93817600-93838600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:93817600-93838600	Weak transcription	Fetal Stomach	stomach
36	chr10:93817600-93840000	Weak transcription	Spleen	Spleen
37	chr10:93817600-93840200	Weak transcription	Esophagus	oesophagus
38	chr10:93817600-93840400	Weak transcription	Fetal Intestine Small	intestine
39	chr10:93817600-93840800	Weak transcription	Lung	lung
40	chr10:93818000-93834200	Weak transcription	Brain Anterior Caudate	brain
41	chr10:93819600-93827800	Weak transcription	Liver	Liver
42	chr10:93819600-93828000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:93823200-93842400	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:93823800-93840000	Weak transcription	Fetal Intestine Large	intestine
45	chr10:93824400-93842600	Weak transcription	Right Ventricle	heart
46	chr10:93824600-93828000	Weak transcription	Fetal Heart	heart
47	chr10:93824800-93842600	Weak transcription	HSMMtube	muscle

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