Variant report

Variant	rs73314327
Chromosome Location	chr10:93813267-93813268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93809868..93812362-chr10:93812392..93814570,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882019	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186825	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186828	0.83[ASN][1000 genomes]
rs11818152	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12256118	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1229580	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1711850	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935864	0.84[ASN][1000 genomes]
rs2797645	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4486531	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55901992	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6583801	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7077333	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7093436	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7093730	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7916626	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833364	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833365	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833380	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs833386	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9787645	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv551923	chr10:93804974-93835969	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93787400-93818400	Weak transcription	Colonic Mucosa	Colon
2	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
3	chr10:93787600-93828000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:93788400-93814200	Weak transcription	HepG2	liver
5	chr10:93789800-93816400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:93791800-93838400	Weak transcription	Brain Substantia Nigra	brain
7	chr10:93792400-93814800	Weak transcription	Hela-S3	cervix
8	chr10:93792800-93837800	Weak transcription	Brain Angular Gyrus	brain
9	chr10:93793000-93814600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:93794400-93814200	Weak transcription	Osteobl	bone
11	chr10:93794400-93837200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:93795800-93824200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:93796200-93840800	Weak transcription	Psoas Muscle	Psoas
14	chr10:93799200-93824000	Weak transcription	HSMMtube	muscle
15	chr10:93805600-93817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:93806000-93817600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:93806000-93819400	Weak transcription	Brain Germinal Matrix	brain
18	chr10:93808000-93814600	Weak transcription	Primary B cells from cord blood	blood
19	chr10:93808000-93816600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:93808000-93817000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:93808000-93820000	Weak transcription	Fetal Brain Female	brain
22	chr10:93808000-93825400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:93808000-93825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:93808000-93842600	Weak transcription	Fetal Lung	lung
25	chr10:93808200-93817200	Weak transcription	Esophagus	oesophagus
26	chr10:93808200-93842800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:93808400-93815200	Weak transcription	Left Ventricle	heart
28	chr10:93808400-93815800	Weak transcription	Gastric	stomach
29	chr10:93808400-93815800	Weak transcription	Right Ventricle	heart
30	chr10:93808400-93825400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:93808400-93834400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:93808400-93844400	Weak transcription	Primary T cells from cord blood	blood
33	chr10:93809000-93815800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:93810000-93817800	Strong transcription	Liver	Liver
35	chr10:93812000-93814600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:93812000-93814800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr10:93812200-93816800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:93812200-93835800	Weak transcription	Aorta	Aorta
39	chr10:93812400-93815800	Weak transcription	Spleen	Spleen
40	chr10:93812400-93837800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:93812600-93814000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:93812600-93814600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:93812800-93814600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:93812800-93814800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:93812800-93815600	Weak transcription	Fetal Stomach	stomach
46	chr10:93812800-93815600	Weak transcription	Pancreas	Pancrea
47	chr10:93812800-93815800	Weak transcription	Fetal Intestine Small	intestine
48	chr10:93812800-93816200	Weak transcription	Lung	lung
49	chr10:93812800-93816800	Weak transcription	Brain Anterior Caudate	brain
50	chr10:93812800-93834600	Weak transcription	Adipose Nuclei	Adipose

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