Variant report

Variant	rs55901992
Chromosome Location	chr10:93894254-93894255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882019	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186825	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186828	0.88[ASN][1000 genomes]
rs11818152	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12256118	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1229580	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1711850	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935864	0.81[ASN][1000 genomes]
rs2797645	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4486531	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6583801	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7077333	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7093436	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7093730	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73314327	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7916626	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs833364	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs833365	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs833380	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833386	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9787645	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:93884800-93896400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:93884800-93896800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:93885200-93896200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:93885400-93902000	Weak transcription	NHLF	lung
8	chr10:93885400-93902200	Weak transcription	Brain Angular Gyrus	brain
9	chr10:93885400-93902200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:93885400-93902400	Weak transcription	Brain Substantia Nigra	brain
11	chr10:93885400-93906400	Weak transcription	Aorta	Aorta
12	chr10:93885400-93906600	Weak transcription	Spleen	Spleen
13	chr10:93885400-93908400	Weak transcription	Lung	lung
14	chr10:93885600-93897800	Weak transcription	Gastric	stomach
15	chr10:93885600-93902200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:93885800-93896600	Weak transcription	Fetal Stomach	stomach
17	chr10:93885800-93905600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:93886000-93902000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:93886200-93896800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:93886200-93896800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:93886200-93902200	Weak transcription	Brain Anterior Caudate	brain
22	chr10:93886200-93906000	Weak transcription	Esophagus	oesophagus
23	chr10:93886200-93906400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:93886200-93906600	Weak transcription	Right Ventricle	heart
25	chr10:93886200-93907800	Weak transcription	Psoas Muscle	Psoas
26	chr10:93886200-93910800	Weak transcription	Pancreas	Pancrea
27	chr10:93886200-93911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:93886400-93896600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:93886400-93901800	Weak transcription	Hela-S3	cervix
30	chr10:93887400-93902200	Weak transcription	Left Ventricle	heart
31	chr10:93889000-93901800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:93891400-93902400	Weak transcription	HepG2	liver
33	chr10:93891400-93906600	Weak transcription	Liver	Liver
34	chr10:93891600-93896600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr10:93892200-93902200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:93892400-93896600	Weak transcription	Adipose Nuclei	Adipose
37	chr10:93892600-93911000	Weak transcription	Fetal Heart	heart
38	chr10:93893600-93901400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr10:93893800-93899400	Weak transcription	Fetal Intestine Large	intestine

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