Variant report

Variant	rs1224128
Chromosome Location	chr6:37415676-37415677
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37405566..37407359-chr6:37414898..37416616,2	K562	blood:
2	chr6:37405566..37410075-chr6:37411799..37416398,4	K562	blood:
3	chr6:37412988..37415728-chr6:37427713..37429537,2	K562	blood:
4	chr6:37415209..37417538-chr6:37427077..37429979,2	K562	blood:

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10692	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11756941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12212090	0.92[ASN][1000 genomes]
rs1224127	0.97[ASN][1000 genomes]
rs1224129	0.93[ASN][1000 genomes]
rs1812186	0.81[ASN][1000 genomes]
rs2252920	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2646926	0.94[ASN][1000 genomes]
rs2646933	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2646934	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2776881	0.82[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2776906	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2776908	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2776910	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2776911	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2776916	0.83[ASN][1000 genomes]
rs2776918	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2797790	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4257849	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62406516	0.86[ASN][1000 genomes]
rs756202	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs883372	0.80[AMR][1000 genomes]
rs904251	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs931649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1224128	RP1-153P14.8	cis	Whole Blood	GTEx
rs1224128	RP1-153P14.5	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37402200-37417800	Weak transcription	Small Intestine	intestine
2	chr6:37402200-37427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:37403000-37434400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:37403200-37418400	Strong transcription	Fetal Stomach	stomach
5	chr6:37403200-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:37403200-37423800	Strong transcription	Fetal Thymus	thymus
7	chr6:37403200-37432000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:37403200-37432600	Strong transcription	Placenta	Placenta
9	chr6:37403200-37433200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:37403400-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:37403400-37423800	Strong transcription	K562	blood
12	chr6:37403400-37432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:37407800-37417000	Strong transcription	Fetal Brain Female	brain
14	chr6:37408800-37433400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:37409200-37426400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:37410000-37422200	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:37410400-37432400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:37410600-37434200	Strong transcription	Primary T cells from cord blood	blood
19	chr6:37411200-37422000	Weak transcription	Right Atrium	heart
20	chr6:37411200-37428200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:37411200-37431400	Strong transcription	GM12878-XiMat	blood
22	chr6:37411200-37432800	Strong transcription	Primary B cells from cord blood	blood
23	chr6:37411200-37433200	Strong transcription	Fetal Intestine Small	intestine
24	chr6:37411400-37421800	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr6:37411400-37427600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:37411400-37432200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:37411400-37433600	Strong transcription	Dnd41	blood
28	chr6:37411400-37437200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:37411600-37415800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:37411600-37416400	Strong transcription	HepG2	liver
31	chr6:37411600-37417000	Strong transcription	Brain Germinal Matrix	brain
32	chr6:37411600-37418200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:37411600-37419200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr6:37411600-37421200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:37411600-37421200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:37411600-37421400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr6:37411600-37421400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr6:37411600-37421400	Strong transcription	Osteobl	bone
39	chr6:37411600-37421600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:37411600-37424800	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:37411600-37427200	Strong transcription	Fetal Muscle Leg	muscle
42	chr6:37411600-37427800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:37411600-37431800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:37411600-37431800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr6:37411600-37432000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr6:37411600-37432000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:37411600-37432000	Strong transcription	Liver	Liver
48	chr6:37411600-37432000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr6:37411600-37432200	Strong transcription	Thymus	Thymus
50	chr6:37411600-37432800	Strong transcription	Primary B cells from peripheral blood	blood

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