Variant report

Variant	rs2646933
Chromosome Location	chr6:37402070-37402071
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37401832..37403890-chr6:37408583..37410719,2	K562	blood:
2	chr6:37402051..37404356-chr6:37464049..37465588,2	K562	blood:
3	chr6:37400721..37403243-chr6:74228826..74231547,2	K562	blood:
4	chr6:37400455..37402954-chr6:37426378..37431695,5	K562	blood:

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction
ENSG00000156508	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947673	0.84[CHB][hapmap]
rs11756941	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12212090	0.94[ASN][1000 genomes]
rs1224127	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1224128	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1224129	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1812186	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2252920	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2646926	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2646934	0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs2776881	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2776906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2776908	0.84[ASN][1000 genomes]
rs2776910	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2776911	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2776916	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2797790	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4257849	0.95[ASN][1000 genomes]
rs62406516	0.88[ASN][1000 genomes]
rs756202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs904251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs931649	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2646933	RP1-153P14.8	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37399800-37402200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:37400000-37402200	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:37400000-37402200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:37400000-37402600	Active TSS	GM12878-XiMat	blood
5	chr6:37400200-37402200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:37400200-37402200	Active TSS	A549	lung
7	chr6:37400200-37402400	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:37400200-37402400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:37400400-37402200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:37400600-37402200	Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:37400600-37402200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:37400600-37402400	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr6:37400600-37402400	Active TSS	Right Atrium	heart
14	chr6:37401200-37402200	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr6:37401200-37402400	Flanking Active TSS	Fetal Brain Male	brain
16	chr6:37401400-37402200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr6:37401400-37402200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr6:37401400-37402200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr6:37401400-37402200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:37401400-37402200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr6:37401400-37402200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:37401400-37402200	Flanking Active TSS	Liver	Liver
23	chr6:37401400-37402200	Flanking Active TSS	Brain Germinal Matrix	brain
24	chr6:37401400-37402200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr6:37401400-37402200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr6:37401400-37402200	Flanking Active TSS	Fetal Brain Female	brain
27	chr6:37401400-37402200	Flanking Active TSS	Fetal Muscle Leg	muscle
28	chr6:37401400-37402200	Flanking Active TSS	Placenta	Placenta
29	chr6:37401400-37402200	Flanking Active TSS	Fetal Thymus	thymus
30	chr6:37401400-37402200	Flanking Active TSS	Pancreas	Pancrea
31	chr6:37401400-37402200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr6:37401400-37402200	Flanking Active TSS	HUVEC	blood vessel
33	chr6:37401400-37402400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:37401400-37402400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:37401400-37402400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr6:37401400-37402400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr6:37401400-37402400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:37401400-37402400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:37401400-37402400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:37401400-37402400	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr6:37401400-37402400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr6:37401400-37402400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr6:37401400-37402400	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr6:37401400-37402800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr6:37401600-37402200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:37401600-37402200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr6:37401600-37402200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:37401600-37402200	Flanking Active TSS	Primary B cells from peripheral blood	blood
49	chr6:37401600-37402200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr6:37401600-37402200	Flanking Active TSS	Brain Cingulate Gyrus	brain

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