Variant report

Variant	rs2776881
Chromosome Location	chr6:37393552-37393553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37370276..37372478-chr6:37392571..37394863,2	K562	blood:
2	chr6:37341724..37343636-chr6:37392718..37394515,2	K562	blood:
3	chr6:37391746..37394017-chr6:37438131..37441075,2	MCF-7	breast:
4	chr6:37389971..37393834-chr6:37440150..37443110,4	MCF-7	breast:
5	chr6:37392263..37395409-chr6:37412629..37415266,3	K562	blood:
6	chr6:37391025..37394535-chr6:37463764..37466076,3	K562	blood:
7	chr6:37391727..37394301-chr6:37541639..37543938,2	K562	blood:
8	chr6:37391738..37394075-chr6:37408772..37412559,3	K562	blood:
9	chr6:37366536..37368392-chr6:37392528..37396420,3	K562	blood:
10	chr6:37386436..37388168-chr6:37390589..37393996,3	MCF-7	breast:
11	chr6:37390262..37393860-chr6:37393896..37398106,6	MCF-7	breast:
12	chr6:37393178..37396451-chr6:37404709..37407721,4	K562	blood:
13	chr6:37393552..37395813-chr6:37520408..37522475,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10692	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11756941	0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12212090	0.81[ASN][1000 genomes]
rs1224127	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1224128	0.82[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1224129	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1812186	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2252920	0.91[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2395671	0.89[ASN][1000 genomes]
rs2646926	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2646933	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2646934	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2776880	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2776906	0.87[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2776910	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs2776911	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs2776916	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2776917	0.86[ASN][1000 genomes]
rs2797790	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap]
rs4257849	0.81[ASN][1000 genomes]
rs6929029	0.82[ASN][1000 genomes]
rs756202	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs904251	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs931649	0.83[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807065	chr6:37379409-37399185	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2776881	RP1-153P14.8	cis	Whole Blood	GTEx
rs2776881	FTSJD2	cis	parietal	SCAN
rs2776881	C6orf129	cis	parietal	SCAN
rs2776881	RP1-153P14.5	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37393200-37394600	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links