Variant report
| Variant | rs2776917 |
|---|---|
| Chromosome Location | chr6:37390211-37390212 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:37389971..37393834-chr6:37440150..37443110,4 | MCF-7 | breast: | |
| 2 | chr6:37388900..37391581-chr6:37403584..37406042,2 | MCF-7 | breast: | |
| 3 | chr6:37384249..37387029-chr6:37388839..37391579,3 | K562 | blood: | |
| 4 | chr6:37383701..37387029-chr6:37388839..37391915,5 | K562 | blood: | |
| 5 | chr6:37322263..37324339-chr6:37389226..37391465,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000137200 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs2395671 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2646934 | 0.86[ASN][1000 genomes] |
| rs2776880 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2776881 | 0.86[ASN][1000 genomes] |
| rs6929029 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1807065 | chr6:37379409-37399185 | Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2776917 | RP1-153P14.8 | cis | Whole Blood | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
