Variant report

Variant	rs2395671
Chromosome Location	chr6:37392050-37392051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37357575..37360002-chr6:37390264..37392492,2	MCF-7	breast:
2	chr6:37336070..37337842-chr6:37390532..37393304,2	K562	blood:
3	chr6:37391025..37393237-chr6:37463835..37465802,2	K562	blood:
4	chr6:37391746..37394017-chr6:37438131..37441075,2	MCF-7	breast:
5	chr6:37389971..37393834-chr6:37440150..37443110,4	MCF-7	breast:
6	chr6:37391025..37394535-chr6:37463764..37466076,3	K562	blood:
7	chr6:37391727..37394301-chr6:37541639..37543938,2	K562	blood:
8	chr6:37290599..37292900-chr6:37390289..37392598,3	K562	blood:
9	chr6:37391738..37394075-chr6:37408772..37412559,3	K562	blood:
10	chr6:37387252..37388819-chr6:37391241..37393243,2	K562	blood:
11	chr6:37391896..37393452-chr6:37438457..37441158,2	K562	blood:
12	chr6:37391304..37393328-chr6:37535749..37538149,2	MCF-7	breast:
13	chr12:57472395..57472910-chr6:37391804..37392346,2	MCF-7	breast:
14	chr6:37375004..37377586-chr6:37391098..37392841,2	MCF-7	breast:
15	chr6:37379072..37381849-chr6:37391515..37393153,2	MCF-7	breast:
16	chr6:37386436..37388168-chr6:37390589..37393996,3	MCF-7	breast:
17	chr6:37390262..37393860-chr6:37393896..37398106,6	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2646934	0.89[ASN][1000 genomes]
rs2776880	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2776881	0.89[ASN][1000 genomes]
rs2776917	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6929029	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807065	chr6:37379409-37399185	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2395671	RP1-153P14.8	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37391600-37393200	Active TSS	K562	blood
2	chr6:37391800-37392400	Active TSS	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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