Variant report

Variant	rs6929029
Chromosome Location	chr6:37374939-37374940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10692	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs11756941	0.87[JPT][hapmap]
rs1224128	0.87[JPT][hapmap]
rs2252920	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2395671	0.85[ASN][1000 genomes]
rs2646933	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2646934	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2776880	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2776881	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2776906	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2776910	0.83[JPT][hapmap]
rs2776911	0.83[JPT][hapmap]
rs2776917	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2797790	0.83[JPT][hapmap]
rs756202	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs904251	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs931649	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520294	chr6:37360557-37380324	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37373800-37375400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:37374000-37375200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:37374200-37375400	Enhancers	HMEC	breast
4	chr6:37374800-37375000	Enhancers	NHEK	skin
5	chr6:37374800-37375200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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