Variant report

Variant	rs12244540
Chromosome Location	chr10:27846610-27846611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11015865	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015866	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015867	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244475	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252778	1.00[AMR][1000 genomes]
rs12264640	1.00[AMR][1000 genomes]
rs12266893	1.00[AMR][1000 genomes]
rs56243416	1.00[AMR][1000 genomes]
rs58633742	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59791103	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59839325	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60267110	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61466275	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127356	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27835000-27847200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:27835200-27847800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:27835200-27852600	Weak transcription	Aorta	Aorta
4	chr10:27836600-27847600	Weak transcription	Osteobl	bone
5	chr10:27846000-27847600	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:27846600-27846800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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