Variant report

Variant	rs61466275
Chromosome Location	chr10:27837452-27837453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27831087..27832899-chr10:27837442..27839109,2	MCF-7	breast:
2	chr10:27835272..27837597-chr10:27837775..27840904,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11015865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015867	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244475	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244540	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252778	1.00[AMR][1000 genomes]
rs12264640	1.00[AMR][1000 genomes]
rs12266893	1.00[AMR][1000 genomes]
rs56243416	1.00[AMR][1000 genomes]
rs58633742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59791103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59839325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60267110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127356	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27823000-27838200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:27823600-27838200	Weak transcription	Pancreas	Pancrea
3	chr10:27824600-27838000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:27826200-27838000	Weak transcription	Ovary	ovary
5	chr10:27826400-27841800	Weak transcription	HSMMtube	muscle
6	chr10:27826600-27838200	Weak transcription	Spleen	Spleen
7	chr10:27827200-27838200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:27827400-27839600	Weak transcription	Brain Substantia Nigra	brain
9	chr10:27828000-27839000	Weak transcription	Fetal Lung	lung
10	chr10:27828400-27838400	Weak transcription	NH-A	brain
11	chr10:27831400-27838000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:27831800-27838000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:27832000-27838200	Weak transcription	HUVEC	blood vessel
14	chr10:27832000-27839600	Weak transcription	Esophagus	oesophagus
15	chr10:27832000-27840800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:27832400-27838200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:27832400-27838200	Weak transcription	GM12878-XiMat	blood
18	chr10:27832400-27838800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:27833600-27840400	Weak transcription	Primary T cells from cord blood	blood
20	chr10:27834400-27840000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:27834800-27838600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:27834800-27839600	Weak transcription	Right Ventricle	heart
23	chr10:27835000-27837800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:27835000-27838400	Weak transcription	Thymus	Thymus
25	chr10:27835000-27838600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr10:27835000-27839000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:27835000-27839600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:27835000-27839800	Weak transcription	Left Ventricle	heart
29	chr10:27835000-27840800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:27835000-27841600	Weak transcription	NHEK	skin
31	chr10:27835000-27847200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:27835200-27838200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:27835200-27838200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:27835200-27838200	Weak transcription	Fetal Thymus	thymus
35	chr10:27835200-27838200	Weak transcription	Lung	lung
36	chr10:27835200-27838200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr10:27835200-27838400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr10:27835200-27838400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:27835200-27838600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:27835200-27839200	Weak transcription	Fetal Stomach	stomach
41	chr10:27835200-27839600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:27835200-27839800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr10:27835200-27841800	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:27835200-27842400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:27835200-27843600	Weak transcription	Fetal Muscle Leg	muscle
46	chr10:27835200-27847800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:27835200-27852600	Weak transcription	Aorta	Aorta
48	chr10:27835400-27839000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr10:27835400-27840000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:27836000-27838200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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