Variant report

Variant	rs58633742
Chromosome Location	chr10:27838409-27838410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27835272..27837181-chr10:27838357..27840801,2	K562	blood:
2	chr10:27835272..27837597-chr10:27837775..27840904,4	K562	blood:
3	chr10:27831087..27832899-chr10:27837442..27839109,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11015865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015867	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244475	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244540	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252778	1.00[AMR][1000 genomes]
rs12264640	1.00[AMR][1000 genomes]
rs12266893	1.00[AMR][1000 genomes]
rs56243416	1.00[AMR][1000 genomes]
rs59791103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59839325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60267110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61466275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127356	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27826400-27841800	Weak transcription	HSMMtube	muscle
2	chr10:27827400-27839600	Weak transcription	Brain Substantia Nigra	brain
3	chr10:27828000-27839000	Weak transcription	Fetal Lung	lung
4	chr10:27832000-27839600	Weak transcription	Esophagus	oesophagus
5	chr10:27832000-27840800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:27832400-27838800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:27833600-27840400	Weak transcription	Primary T cells from cord blood	blood
8	chr10:27834400-27840000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:27834800-27838600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:27834800-27839600	Weak transcription	Right Ventricle	heart
11	chr10:27835000-27838600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:27835000-27839000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:27835000-27839600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:27835000-27839800	Weak transcription	Left Ventricle	heart
15	chr10:27835000-27840800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:27835000-27841600	Weak transcription	NHEK	skin
17	chr10:27835000-27847200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:27835200-27838600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:27835200-27839200	Weak transcription	Fetal Stomach	stomach
20	chr10:27835200-27839600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:27835200-27839800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:27835200-27841800	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:27835200-27842400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:27835200-27843600	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:27835200-27847800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:27835200-27852600	Weak transcription	Aorta	Aorta
27	chr10:27835400-27839000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:27835400-27840000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:27836200-27840600	Weak transcription	Placenta	Placenta
30	chr10:27836600-27847600	Weak transcription	Osteobl	bone
31	chr10:27836800-27839400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:27836800-27840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:27836800-27844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:27837000-27845000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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