Variant report

Variant	rs12245569
Chromosome Location	chr10:27933549-27933550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11015916	1.00[AMR][1000 genomes]
rs12241662	1.00[AMR][1000 genomes]
rs12242419	1.00[AMR][1000 genomes]
rs12266542	1.00[AMR][1000 genomes]
rs56377437	1.00[AMR][1000 genomes]
rs57170893	1.00[AMR][1000 genomes]
rs59307603	1.00[AMR][1000 genomes]
rs74127332	1.00[AMR][1000 genomes]
rs74127336	1.00[AMR][1000 genomes]
rs74127354	1.00[AMR][1000 genomes]
rs74127358	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3362263	chr10:27929908-27934180	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27932200-27934000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:27932200-27935600	Enhancers	Osteobl	bone
3	chr10:27932400-27933600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:27932600-27933600	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:27932600-27933600	Weak transcription	Ovary	ovary
6	chr10:27932600-27935000	Weak transcription	Adipose Nuclei	Adipose
7	chr10:27932800-27933800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:27932800-27934600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:27932800-27935200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:27932800-27935400	Weak transcription	HSMM	muscle
11	chr10:27933000-27934400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:27933200-27933600	Weak transcription	NHDF-Ad	bronchial
13	chr10:27933200-27934000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:27933400-27934400	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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