Variant report

Variant	rs56377437
Chromosome Location	chr10:27835315-27835316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27835272..27837181-chr10:27838357..27840801,2	K562	blood:
2	chr10:27799337..27801640-chr10:27835012..27836512,2	K562	blood:
3	chr10:27823448..27828239-chr10:27829759..27835759,6	K562	blood:
4	chr10:27835272..27837597-chr10:27837775..27840904,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11015916	1.00[AMR][1000 genomes]
rs12241662	1.00[AMR][1000 genomes]
rs12242419	1.00[AMR][1000 genomes]
rs12245569	1.00[AMR][1000 genomes]
rs12266542	1.00[AMR][1000 genomes]
rs57170893	1.00[AMR][1000 genomes]
rs59307603	1.00[AMR][1000 genomes]
rs74127332	1.00[AMR][1000 genomes]
rs74127336	1.00[AMR][1000 genomes]
rs74127354	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127358	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:27814200-27836000	Weak transcription	Brain Germinal Matrix	brain
3	chr10:27823000-27836200	Weak transcription	Fetal Brain Female	brain
4	chr10:27823000-27838200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:27823400-27836600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:27823600-27838200	Weak transcription	Pancreas	Pancrea
7	chr10:27824400-27835800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:27824400-27836200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:27824600-27836000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:27824600-27836400	Weak transcription	Fetal Kidney	kidney
11	chr10:27824600-27838000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:27824800-27836600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:27825000-27836600	Weak transcription	Gastric	stomach
14	chr10:27826200-27836600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:27826200-27838000	Weak transcription	Ovary	ovary
16	chr10:27826400-27836400	Weak transcription	A549	lung
17	chr10:27826400-27841800	Weak transcription	HSMMtube	muscle
18	chr10:27826600-27838200	Weak transcription	Spleen	Spleen
19	chr10:27827200-27836800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:27827200-27838200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:27827400-27839600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:27827800-27836600	Weak transcription	Fetal Intestine Large	intestine
23	chr10:27828000-27836000	Weak transcription	NHLF	lung
24	chr10:27828000-27836400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:27828000-27839000	Weak transcription	Fetal Lung	lung
26	chr10:27828200-27836200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:27828400-27838400	Weak transcription	NH-A	brain
28	chr10:27828600-27836600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:27831400-27836800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:27831400-27838000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:27831600-27836000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:27831600-27836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:27831800-27838000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:27832000-27838200	Weak transcription	HUVEC	blood vessel
35	chr10:27832000-27839600	Weak transcription	Esophagus	oesophagus
36	chr10:27832000-27840800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:27832200-27837000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:27832400-27836000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:27832400-27836000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:27832400-27836200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:27832400-27836400	Weak transcription	Dnd41	blood
42	chr10:27832400-27836600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:27832400-27836600	Weak transcription	Primary B cells from cord blood	blood
44	chr10:27832400-27838200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:27832400-27838200	Weak transcription	GM12878-XiMat	blood
46	chr10:27832400-27838800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:27833600-27840400	Weak transcription	Primary T cells from cord blood	blood
48	chr10:27833800-27836800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:27834200-27836800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:27834400-27835400	Strong transcription	Stomach Smooth Muscle	stomach

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