Variant report

Variant	rs74127354
Chromosome Location	chr10:27842461-27842462
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11015916	1.00[AMR][1000 genomes]
rs12241662	1.00[AMR][1000 genomes]
rs12242419	1.00[AMR][1000 genomes]
rs12245569	1.00[AMR][1000 genomes]
rs12266542	1.00[AMR][1000 genomes]
rs56377437	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57170893	1.00[AMR][1000 genomes]
rs59307603	1.00[AMR][1000 genomes]
rs74127332	1.00[AMR][1000 genomes]
rs74127336	1.00[AMR][1000 genomes]
rs74127358	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27835000-27847200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:27835200-27843600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:27835200-27847800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:27835200-27852600	Weak transcription	Aorta	Aorta
5	chr10:27836600-27847600	Weak transcription	Osteobl	bone
6	chr10:27836800-27844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:27837000-27845000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:27842400-27842600	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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