Variant report

Variant	rs12247370
Chromosome Location	chr10:96197413-96197414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96169823..96172016-chr10:96197395..96199700,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11187954	0.88[AFR][1000 genomes]
rs11187997	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11188004	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12246731	1.00[AMR][1000 genomes]
rs12250480	0.88[AFR][1000 genomes]
rs12256637	0.90[AFR][1000 genomes]
rs12260069	0.86[AFR][1000 genomes]
rs13376759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58324538	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7068064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081603	0.82[AFR][1000 genomes]
rs7092239	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323528	0.90[AFR][1000 genomes]
rs73327425	0.98[AFR][1000 genomes]
rs73327452	0.88[AFR][1000 genomes]
rs73327462	0.86[AFR][1000 genomes]
rs73327472	0.86[AFR][1000 genomes]
rs73327474	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327486	0.86[AFR][1000 genomes]
rs73327491	0.82[AFR][1000 genomes]
rs73327500	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329605	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96184800-96199200	Weak transcription	Gastric	stomach
3	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
4	chr10:96190000-96198200	Weak transcription	Pancreas	Pancrea
5	chr10:96190800-96234600	Weak transcription	Osteobl	bone
6	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:96192200-96199000	Weak transcription	HSMM	muscle
8	chr10:96195800-96199000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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