Variant report

Variant	rs73327472
Chromosome Location	chr10:96243464-96243465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11187855	1.00[AMR][1000 genomes]
rs11187898	1.00[AMR][1000 genomes]
rs11187954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11188002	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11188004	0.82[AFR][1000 genomes]
rs11188029	1.00[AMR][1000 genomes]
rs11188035	1.00[AMR][1000 genomes]
rs12243492	1.00[AMR][1000 genomes]
rs12243849	1.00[AMR][1000 genomes]
rs12247370	0.86[AFR][1000 genomes]
rs12249578	1.00[AMR][1000 genomes]
rs12249709	1.00[AMR][1000 genomes]
rs12250011	1.00[AMR][1000 genomes]
rs12250480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254178	1.00[AMR][1000 genomes]
rs12256637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259382	1.00[AMR][1000 genomes]
rs12260069	1.00[AFR][1000 genomes]
rs12266679	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266908	1.00[AMR][1000 genomes]
rs12269029	1.00[AMR][1000 genomes]
rs13376759	0.90[AFR][1000 genomes]
rs2244404	1.00[AMR][1000 genomes]
rs57412910	1.00[AMR][1000 genomes]
rs58324538	0.90[AFR][1000 genomes]
rs60996053	1.00[AMR][1000 genomes]
rs6583938	1.00[AMR][1000 genomes]
rs7067896	1.00[AMR][1000 genomes]
rs7068064	0.90[AFR][1000 genomes]
rs7081603	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082254	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7092239	0.88[AFR][1000 genomes]
rs73321857	1.00[AMR][1000 genomes]
rs73323523	1.00[AMR][1000 genomes]
rs73323528	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327425	0.84[AFR][1000 genomes]
rs73327452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329605	0.82[AFR][1000 genomes]
rs73329611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7907525	1.00[AMR][1000 genomes]
rs9665608	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:96212600-96248600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:96215600-96255200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:96216600-96243600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:96219800-96283400	Weak transcription	Lung	lung
7	chr10:96220000-96248800	Weak transcription	Colonic Mucosa	Colon
8	chr10:96221800-96255600	Weak transcription	Ovary	ovary
9	chr10:96222800-96255800	Weak transcription	HepG2	liver
10	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
11	chr10:96227800-96255600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:96230400-96244000	Weak transcription	Pancreas	Pancrea
13	chr10:96234000-96243600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:96235000-96255200	Weak transcription	Osteobl	bone
15	chr10:96236000-96248600	Weak transcription	Left Ventricle	heart
16	chr10:96236000-96254400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:96236400-96268600	Weak transcription	HSMMtube	muscle
18	chr10:96237000-96244000	Weak transcription	Aorta	Aorta
19	chr10:96237200-96243600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:96237400-96248800	Weak transcription	Brain Angular Gyrus	brain
21	chr10:96237600-96258800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:96237600-96271400	Weak transcription	Placenta	Placenta
23	chr10:96238200-96244000	Weak transcription	Fetal Intestine Small	intestine
24	chr10:96238200-96258400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:96238200-96273400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:96238400-96244000	Weak transcription	Fetal Stomach	stomach
27	chr10:96240200-96271000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:96241400-96250200	Weak transcription	Fetal Lung	lung
29	chr10:96241600-96243600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:96241800-96243600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:96242800-96244000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:96243000-96243800	Strong transcription	HSMM	muscle
33	chr10:96243200-96248600	Weak transcription	Brain Substantia Nigra	brain
34	chr10:96243400-96244000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:96243400-96249000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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