Variant report

Variant	rs2244404
Chromosome Location	chr10:96144863-96144864
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11187855	1.00[AMR][1000 genomes]
rs11187898	1.00[AMR][1000 genomes]
rs11187954	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11188002	1.00[AMR][1000 genomes]
rs11188029	1.00[AMR][1000 genomes]
rs11188035	1.00[AMR][1000 genomes]
rs12243492	1.00[AMR][1000 genomes]
rs12243849	1.00[AMR][1000 genomes]
rs12246731	0.98[AFR][1000 genomes]
rs12249578	1.00[AMR][1000 genomes]
rs12249709	1.00[AMR][1000 genomes]
rs12250011	1.00[AMR][1000 genomes]
rs12250480	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254178	1.00[AMR][1000 genomes]
rs12256637	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259382	1.00[AMR][1000 genomes]
rs12266679	1.00[AMR][1000 genomes]
rs12266908	1.00[AMR][1000 genomes]
rs12269029	1.00[AMR][1000 genomes]
rs57412910	1.00[AMR][1000 genomes]
rs60996053	1.00[AMR][1000 genomes]
rs6583938	1.00[AMR][1000 genomes]
rs7067896	1.00[AMR][1000 genomes]
rs7081603	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082254	1.00[AMR][1000 genomes]
rs73321857	1.00[AMR][1000 genomes]
rs73323523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323528	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327452	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327462	1.00[AMR][1000 genomes]
rs73327472	1.00[AMR][1000 genomes]
rs73327486	1.00[AMR][1000 genomes]
rs73327491	1.00[AMR][1000 genomes]
rs73327495	1.00[AMR][1000 genomes]
rs73329611	1.00[AMR][1000 genomes]
rs7907525	1.00[AMR][1000 genomes]
rs9665608	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3398177	chr10:96139011-96169931	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3411992	chr10:96139011-96172041	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96140600-96146000	Enhancers	Fetal Intestine Large	intestine
2	chr10:96143000-96145000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:96143200-96155400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:96143400-96145000	Enhancers	Duodenum Mucosa	Duodenum
5	chr10:96144600-96145000	Enhancers	Colonic Mucosa	Colon
6	chr10:96144600-96145000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:96144600-96145200	Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr10:96144600-96145800	Enhancers	Rectal Mucosa Donor 31	rectum

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