Variant report

Variant	rs12250288
Chromosome Location	chr10:95571674-95571675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10786139	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187671	0.89[EUR][1000 genomes]
rs12356775	0.95[EUR][1000 genomes]
rs1416757	0.81[EUR][1000 genomes]
rs1924700	0.89[EUR][1000 genomes]
rs1924701	0.82[EUR][1000 genomes]
rs59509730	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074526	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7082933	0.95[EUR][1000 genomes]
rs7097242	0.89[EUR][1000 genomes]
rs7098612	0.87[EUR][1000 genomes]
rs72810643	0.95[EUR][1000 genomes]
rs72810644	0.94[EUR][1000 genomes]
rs72810647	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975815	chr10:95563645-95572587	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95565400-95573800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:95565600-95572600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:95567000-95572400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:95570200-95575200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:95570800-95572800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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