Variant report

Variant	rs1924700
Chromosome Location	chr10:95565400-95565401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10786139	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11187671	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250288	0.89[EUR][1000 genomes]
rs12356775	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1416757	0.89[EUR][1000 genomes]
rs1924701	0.91[EUR][1000 genomes]
rs59509730	0.91[EUR][1000 genomes]
rs7074526	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7082933	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7097242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098612	0.84[EUR][1000 genomes]
rs72810643	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72810644	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72810647	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975815	chr10:95563645-95572587	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1924700	DHDPSL	cis	parietal	SCAN
rs1924700	MYOF	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95557400-95566600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:95563600-95565600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:95564000-95565400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:95564400-95565400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:95564400-95566600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:95564400-95566600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:95564400-95566800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:95564600-95565400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:95564600-95566200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:95565000-95565800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:95565400-95565600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:95565400-95567400	Enhancers	Fetal Muscle Leg	muscle
13	chr10:95565400-95573800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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