Variant report

Variant	rs1416757
Chromosome Location	chr10:95561397-95561398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10786139	0.88[EUR][1000 genomes]
rs11187596	1.00[CHB][hapmap]
rs11187671	0.91[EUR][1000 genomes]
rs12250288	0.81[EUR][1000 genomes]
rs12356775	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1924700	0.89[EUR][1000 genomes]
rs1924701	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998840	1.00[CHB][hapmap]
rs59509730	0.84[EUR][1000 genomes]
rs7074526	0.83[EUR][1000 genomes]
rs7082933	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7097242	0.91[EUR][1000 genomes]
rs7098612	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810643	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72810644	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72810647	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1416757	MYOF	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95551000-95563400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:95552600-95563600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:95556200-95563600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:95557400-95566600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:95558400-95563400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:95559400-95561400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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